Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V8N34_RS01150 Genome accession   NZ_CP149804
Coordinates   211535..212248 (+) Length   237 a.a.
NCBI ID   WP_172079028.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 206535..217248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS01135 (V8N34_01135) - 207792..208607 (-) 816 Protein_190 glucose PTS transporter subunit IIA -
  V8N34_RS01140 (V8N34_01140) - 208738..210028 (-) 1291 Protein_191 IS4 family transposase -
  V8N34_RS01145 (V8N34_01145) treB 210112..211302 (-) 1191 Protein_192 PTS trehalose transporter subunit IIBC -
  V8N34_RS01150 (V8N34_01150) treR 211535..212248 (+) 714 WP_172079028.1 trehalose operon repressor Regulator
  V8N34_RS01155 (V8N34_01155) - 212306..212617 (+) 312 WP_002935948.1 hypothetical protein -
  V8N34_RS01160 (V8N34_01160) - 212614..213162 (+) 549 WP_029188222.1 CvpA family protein -
  V8N34_RS01165 (V8N34_01165) mutS/mutS2 213657..215990 (+) 2334 WP_172060615.1 endonuclease MutS2 Machinery gene
  V8N34_RS01170 (V8N34_01170) - 216014..216667 (+) 654 WP_172079029.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27199.08 Da        Isoelectric Point: 7.3095

>NTDB_id=875457 V8N34_RS01150 WP_172079028.1 211535..212248(+) (treR) [Streptococcus suis strain YA]
MKKYQEIYNNLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=875457 V8N34_RS01150 WP_172079028.1 211535..212248(+) (treR) [Streptococcus suis strain YA]
ATGAAAAAATACCAAGAAATTTATAATAACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515