Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V8N34_RS00210 Genome accession   NZ_CP149804
Coordinates   28614..29396 (+) Length   260 a.a.
NCBI ID   WP_002935335.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23614..34396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS00190 (V8N34_00190) mreD 24435..24950 (+) 516 WP_002935339.1 rod shape-determining protein MreD -
  V8N34_RS00195 (V8N34_00195) - 25035..26291 (+) 1257 WP_024387801.1 CHAP domain-containing protein -
  V8N34_RS00200 (V8N34_00200) - 26394..27362 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  V8N34_RS00205 (V8N34_00205) - 27449..28627 (+) 1179 WP_061704554.1 pyridoxal phosphate-dependent aminotransferase -
  V8N34_RS00210 (V8N34_00210) recO 28614..29396 (+) 783 WP_002935335.1 DNA repair protein RecO Machinery gene
  V8N34_RS00215 (V8N34_00215) plsX 29393..30400 (+) 1008 WP_044756061.1 phosphate acyltransferase PlsX -
  V8N34_RS00220 (V8N34_00220) - 30393..30641 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  V8N34_RS00225 (V8N34_00225) purC 30759..31466 (+) 708 WP_024386489.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30486.97 Da        Isoelectric Point: 5.4193

>NTDB_id=875437 V8N34_RS00210 WP_002935335.1 28614..29396(+) (recO) [Streptococcus suis strain YA]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=875437 V8N34_RS00210 WP_002935335.1 28614..29396(+) (recO) [Streptococcus suis strain YA]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTTTACAATAGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCTAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTGGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAAGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673