Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   RFF10_RS04480 Genome accession   NZ_CP133636
Coordinates   979275..981668 (-) Length   797 a.a.
NCBI ID   WP_196296245.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past29     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 974275..986668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF10_RS04460 (RFF10_04460) kdsB 975493..976269 (-) 777 WP_096743089.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RFF10_RS04465 (RFF10_04465) - 976271..976453 (-) 183 WP_096743090.1 Trm112 family protein -
  RFF10_RS04470 (RFF10_04470) lpxK 976465..977442 (-) 978 WP_083002776.1 tetraacyldisaccharide 4'-kinase -
  RFF10_RS04475 (RFF10_04475) msbA 977474..979222 (-) 1749 WP_005716843.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  RFF10_RS04480 (RFF10_04480) rec2 979275..981668 (-) 2394 WP_196296245.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RFF10_RS04485 (RFF10_04485) dksA 981965..982402 (+) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  RFF10_RS04490 (RFF10_04490) pcnB 982491..983996 (+) 1506 WP_046333353.1 polynucleotide adenylyltransferase PcnB -
  RFF10_RS04495 (RFF10_04495) folK 984008..984505 (+) 498 WP_046333354.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RFF10_RS04500 (RFF10_04500) - 984492..985574 (-) 1083 WP_005716866.1 homoserine O-acetyltransferase MetX -
  RFF10_RS04505 (RFF10_04505) - 985737..986447 (+) 711 WP_005722678.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91091.55 Da        Isoelectric Point: 9.8259

>NTDB_id=875370 RFF10_RS04480 WP_196296245.1 979275..981668(-) (rec2) [Pasteurella multocida strain Past29]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHMTLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVGAVSVLMLWYQIFPLSLLHWRGKKITESPWRNCRWLFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSFWSIANTIAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDFKKESLKCYAKVPRFFHLNQMRQLNPSLKWKTYLLAVVISLYCFLQILYKAISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQNYGKTDRT
FCEAGKTWTWQLLTFKALSPTKIVKRAKNTDSCVLLISDGSHHLLLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=875370 RFF10_RS04480 WP_196296245.1 979275..981668(-) (rec2) [Pasteurella multocida strain Past29]
ATGAAAAACGCTCTTTTGTCAATGTCTGTCGTGACCGTATTCAGCGCATGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATGACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATAATCTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGCATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCTGCACAATTGTCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACGGTAAAAAGTGCGGTTAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGTCTGTTACTTGCGCTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACTAACACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATCCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTGGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGAGTCCTT
GGCGCAACTGTCGTTGGCTCTTTAGTCTTCTTCATTTGCAACTTGGTTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATCTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTTTTGGTCTATTGCAAATACTATTGCGAAATATGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATTTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTTAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCAGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGTCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGCGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTCGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCGTCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACTCTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATCTCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAGATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)

Competence protein (Competence)

(213-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.818

96.612

0.501