Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJM95_RS32325 Genome accession   NZ_CP149798
Coordinates   7440795..7441166 (-) Length   123 a.a.
NCBI ID   WP_339134197.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7435795..7446166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS32310 (WJM95_32310) - 7437943..7439550 (+) 1608 WP_339134191.1 multicopper oxidase domain-containing protein -
  WJM95_RS32315 (WJM95_32315) - 7439534..7440037 (+) 504 WP_339134193.1 hypothetical protein -
  WJM95_RS32320 (WJM95_32320) lepB 7440034..7440552 (+) 519 WP_339134195.1 signal peptidase I -
  WJM95_RS32325 (WJM95_32325) vraR 7440795..7441166 (-) 372 WP_339134197.1 response regulator transcription factor Regulator
  WJM95_RS32330 (WJM95_32330) - 7441334..7441999 (+) 666 WP_339134199.1 response regulator transcription factor -
  WJM95_RS32335 (WJM95_32335) - 7441992..7443371 (+) 1380 WP_339134201.1 histidine kinase -
  WJM95_RS32340 (WJM95_32340) - 7443480..7444880 (+) 1401 WP_339134203.1 copper resistance protein CopC -
  WJM95_RS32345 (WJM95_32345) - 7444955..7445584 (+) 630 WP_339134205.1 DUF1775 domain-containing protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 12749.97 Da        Isoelectric Point: 4.6460

>NTDB_id=875357 WJM95_RS32325 WP_339134197.1 7440795..7441166(-) (vraR) [Streptomyces sp. f51]
MPIRLLVVDDHPLVRDTLAGALGRSPLVDVVGVACDGAEAVEAAVRLLPDVVLMDLVMPVLDGAEATRRVLELRPGTRVV
VLTSAVGGRQERAALDAGAAVILRKDTGIDAVLDAVVTVSPKV

Nucleotide


Download         Length: 372 bp        

>NTDB_id=875357 WJM95_RS32325 WP_339134197.1 7440795..7441166(-) (vraR) [Streptomyces sp. f51]
ATGCCGATTCGCCTGCTCGTCGTCGACGACCACCCGCTCGTGCGGGACACCCTGGCGGGCGCGCTGGGCCGCAGTCCGCT
GGTCGACGTGGTGGGCGTGGCCTGCGACGGTGCCGAGGCGGTCGAGGCGGCGGTGCGGCTCCTGCCGGACGTGGTCCTGA
TGGACCTGGTCATGCCGGTCCTGGACGGGGCCGAGGCGACCCGGCGGGTGCTGGAACTCCGTCCGGGGACGCGGGTCGTC
GTGCTGACCTCCGCGGTCGGCGGGCGGCAGGAACGGGCGGCCCTGGACGCCGGGGCCGCCGTGATCCTGCGCAAGGACAC
CGGGATCGACGCGGTGCTCGACGCCGTGGTGACGGTCTCCCCCAAGGTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.333

97.561

0.374