Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WJM95_RS28980 Genome accession   NZ_CP149798
Coordinates   6699819..6702182 (-) Length   787 a.a.
NCBI ID   WP_339133015.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6694819..6707182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS28960 (WJM95_28960) - 6695988..6696737 (+) 750 WP_339133009.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  WJM95_RS28965 (WJM95_28965) - 6697000..6697770 (+) 771 WP_339133011.1 GNAT family N-acyltransferase -
  WJM95_RS28970 (WJM95_28970) - 6698097..6698903 (+) 807 WP_339135910.1 lysophospholipid acyltransferase family protein -
  WJM95_RS28975 (WJM95_28975) - 6698976..6699698 (-) 723 WP_339133013.1 PH domain-containing protein -
  WJM95_RS28980 (WJM95_28980) uvrA 6699819..6702182 (-) 2364 WP_339133015.1 excinuclease ABC subunit UvrA Machinery gene
  WJM95_RS28985 (WJM95_28985) - 6702370..6702870 (-) 501 WP_339133017.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  WJM95_RS28990 (WJM95_28990) - 6703081..6703854 (+) 774 WP_339133019.1 nuclear transport factor 2 family protein -
  WJM95_RS28995 (WJM95_28995) - 6703961..6704929 (+) 969 WP_339133021.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 83997.41 Da        Isoelectric Point: 8.2481

>NTDB_id=875348 WJM95_RS28980 WP_339133015.1 6699819..6702182(-) (uvrA) [Streptomyces sp. f51]
MPSPDGSPHDSHVRVRGAREHNLRGADVDIPRDLLVVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAP
KVGEITGLPPAVSLQQRRSAPTSRSSVGTVTNLSNSLRMLFSRAGRYPQGAERLDSDAFSPNTAAGACPACHGLGQVHRT
TEELLVPDPALSIREGAIAAWPGAWQGKNLRDILDTLGHDVDRPWRDLHAEEREWILFTDEQPVVTVHPVREADRIQRPY
QGTYMSARRYVMKTFADTKSATLRAKAERFLVAAPCAVCGGSRLRPEALAVTFAGRDIARLAALPLVELVKSLTGGAGTS
ESARVLTEDLASRIAPVVELGLGYLSLDRPTPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLER
LKAAGNSVFVVEHHFDVVRGADWLVDVGPGAGEHGGRVLHSGPVAALEGVRESATARFLFERSPAPERAVRRPRGRVSVG
PLTRHNLRGVTAEFPLGVFTAVTGVSGSGKSTLIGEVTGELPGVGRLVGVDQKPIGRTPRSNLATYTGLFDVVRKVFAAT
KEAGARGYGVGRFSFNVPGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNPETLEVTYRGRNIAQILDLTVEAAAR
FFADADTPAVTRSLGTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRIRRGHTFYLLDEPTTGLHPADVEVLMRQLH
GLVDAGHTVVVVEHDMTVVAGADWVIDLGPGGGDEGGRIVACGPPGEVARAAGRTAPYLARALAGRR

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=875348 WJM95_RS28980 WP_339133015.1 6699819..6702182(-) (uvrA) [Streptomyces sp. f51]
ATGCCCAGCCCCGACGGCAGCCCCCACGACTCCCACGTCCGCGTGCGCGGTGCGCGGGAGCACAATCTGCGGGGTGCCGA
CGTCGACATCCCGCGGGACCTCCTCGTGGTGTTCACCGGTGTGTCGGGGTCCGGGAAGTCGTCGCTGGCCTTCGGCACGA
TCTACGCGGAGGCGCAGCGGAGGTACTTCGAGTCGGTCGCCCCGTACGCCCGGCGGCTGATCCACCAGGTGGGGGCGCCG
AAGGTCGGGGAGATCACCGGGCTTCCGCCCGCGGTCTCCCTCCAGCAGCGCAGATCGGCACCCACCTCACGGTCTTCCGT
CGGCACGGTCACCAACCTGTCCAACTCGCTGCGCATGCTGTTCTCGCGCGCGGGCCGCTATCCGCAGGGCGCCGAACGGC
TCGACTCGGACGCGTTCTCCCCGAACACGGCGGCCGGGGCGTGCCCGGCCTGCCACGGCCTGGGTCAAGTCCACCGTACG
ACCGAGGAGTTGCTGGTCCCCGATCCCGCACTGTCGATCCGCGAGGGCGCGATCGCCGCCTGGCCCGGGGCCTGGCAGGG
CAAGAACCTGCGGGACATCCTCGACACGCTCGGCCACGACGTGGACCGGCCCTGGCGCGACCTGCACGCCGAGGAGCGGG
AGTGGATCCTGTTCACGGACGAGCAGCCGGTGGTCACCGTGCATCCGGTGCGCGAGGCCGACCGGATCCAACGCCCGTAC
CAGGGCACGTACATGAGCGCCCGGCGCTATGTCATGAAGACCTTCGCCGACACGAAGAGCGCCACCCTGCGGGCCAAGGC
CGAGCGCTTCCTCGTCGCCGCGCCCTGTGCGGTGTGCGGCGGCAGCAGGCTGCGGCCCGAGGCTCTGGCCGTGACGTTCG
CGGGGCGCGACATCGCCCGATTGGCCGCGCTGCCGCTGGTCGAGCTCGTGAAGTCCCTCACCGGTGGCGCCGGGACCTCC
GAGAGCGCCCGCGTCCTGACGGAGGACCTCGCCTCCCGTATCGCGCCCGTCGTGGAGCTCGGACTCGGCTATCTCAGCCT
CGACCGGCCCACCCCCACGCTGTCGGCGGGCGAGCTCCAACGGCTGCGGCTGGCAACGCAGTTGCGCTCCGGGCTGTTCG
GTGTGGTGTACGTCCTGGACGAGCCGTCCGCGGGCCTGCACCCGGCGGACACGGAGGCTCTGCTCACCGTGCTGGAGCGG
CTGAAGGCGGCGGGCAACTCGGTGTTCGTGGTGGAGCATCACTTCGATGTCGTGCGCGGAGCCGACTGGCTGGTGGATGT
CGGCCCGGGGGCCGGGGAGCACGGCGGGCGGGTCCTGCACAGCGGGCCGGTCGCCGCGCTGGAGGGGGTGCGGGAGTCCG
CGACGGCACGCTTCCTCTTCGAACGCTCCCCCGCTCCGGAACGCGCGGTGCGCCGGCCCCGGGGGCGGGTGTCGGTCGGC
CCGCTGACCCGGCACAATCTGCGCGGGGTCACCGCCGAGTTCCCGCTCGGTGTGTTCACCGCGGTCACCGGCGTCTCCGG
CTCCGGGAAGTCCACGCTGATCGGCGAGGTGACCGGGGAACTGCCGGGCGTCGGACGGCTGGTCGGCGTCGACCAGAAGC
CCATCGGCCGCACTCCCCGCTCCAACCTCGCCACCTACACCGGGCTGTTCGACGTCGTGCGCAAGGTGTTCGCGGCGACG
AAGGAGGCCGGGGCGCGCGGCTACGGAGTGGGGCGGTTCTCCTTCAACGTGCCCGGAGGCCGTTGCGAGACCTGCCAGGG
CGAGGGCTTCGTCAGTGTGGAACTGCTGTTCCTGCCCAGCACGTACGCCCCGTGCCCGGACTGCGGCGGGGCGCGGTACA
ACCCCGAGACCCTCGAAGTGACCTACCGGGGACGGAACATCGCGCAGATCCTGGATCTCACGGTGGAGGCGGCGGCCCGG
TTCTTCGCCGACGCGGACACCCCGGCCGTCACGCGCAGTCTCGGCACCCTGCTCGACGTGGGCCTCGGCTATCTGCGGCT
CGGGCAGCCCGCGACCGAGCTGTCGGGCGGCGAGGCCCAGCGCATCAAGCTGGCGAGCGAGTTGCAGCGGATCCGGCGGG
GGCACACCTTCTACCTCCTCGACGAACCGACGACGGGACTGCATCCGGCCGATGTCGAGGTGCTGATGCGCCAGTTGCAC
GGGCTCGTGGACGCCGGCCACACCGTCGTGGTCGTGGAGCACGACATGACCGTGGTGGCGGGCGCCGACTGGGTGATCGA
CCTCGGCCCCGGCGGGGGTGACGAGGGCGGCCGGATCGTGGCCTGCGGGCCGCCCGGAGAAGTGGCCCGGGCGGCGGGCC
GGACGGCGCCCTACCTCGCCCGGGCACTCGCAGGCCGTCGCTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(163-269)

ABC transporter (ABC_tran)

(487-704)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.836

86.912

0.372
  uvrA Streptococcus pneumoniae TIGR4

42.836

86.912

0.372
  uvrA Streptococcus pneumoniae D39

42.836

86.912

0.372