Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJM95_RS21190 Genome accession   NZ_CP149798
Coordinates   4839217..4839831 (+) Length   204 a.a.
NCBI ID   WP_339131271.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4834217..4844831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS21175 (WJM95_21175) - 4836250..4837254 (+) 1005 WP_339131269.1 ABC transporter ATP-binding protein -
  WJM95_RS21180 (WJM95_21180) - 4837251..4837991 (+) 741 WP_339131270.1 ABC transporter permease -
  WJM95_RS21185 (WJM95_21185) - 4837997..4839220 (+) 1224 WP_339135733.1 sensor histidine kinase -
  WJM95_RS21190 (WJM95_21190) vraR 4839217..4839831 (+) 615 WP_339131271.1 response regulator transcription factor Regulator
  WJM95_RS21195 (WJM95_21195) - 4839853..4840704 (-) 852 WP_339131272.1 transglutaminase-like domain-containing protein -
  WJM95_RS21200 (WJM95_21200) - 4840722..4841813 (-) 1092 WP_339131273.1 GNAT family N-acetyltransferase -
  WJM95_RS21205 (WJM95_21205) fdxA 4841954..4842274 (+) 321 WP_019058397.1 ferredoxin -
  WJM95_RS21210 (WJM95_21210) - 4842453..4843547 (+) 1095 WP_339131275.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  WJM95_RS21215 (WJM95_21215) - 4843700..4844134 (-) 435 WP_339131276.1 ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21560.87 Da        Isoelectric Point: 5.3792

>NTDB_id=875331 WJM95_RS21190 WP_339131271.1 4839217..4839831(+) (vraR) [Streptomyces sp. f51]
MSRTIKVLLAEDQSMVREALAALLGLEPDIEVVAQVARGDEVLAAARAHDVDVALLDIEMPGMTGIEAAAEVHKELPGIK
LLILTTFGRPGYLRSAMESGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELAKALHLSQGTVRNYLSTAIQKLAARNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=875331 WJM95_RS21190 WP_339131271.1 4839217..4839831(+) (vraR) [Streptomyces sp. f51]
ATGAGCCGCACGATCAAGGTCCTGCTCGCCGAGGACCAGTCGATGGTCCGCGAGGCGCTGGCCGCCCTGCTGGGACTCGA
GCCCGACATCGAGGTGGTCGCCCAAGTGGCCCGCGGCGACGAGGTGCTGGCGGCGGCCCGCGCCCACGACGTGGACGTGG
CGCTCCTCGACATCGAGATGCCCGGCATGACGGGCATAGAGGCTGCGGCCGAGGTCCACAAGGAGCTCCCGGGCATCAAG
CTGCTCATCCTCACCACCTTCGGCCGCCCCGGATATCTGCGCAGCGCCATGGAGTCCGGCGCGGACGCCTTCCTGGTCAA
GGACGCCCCGGCCGCCCAACTCGCCGCGGCCGTACGCAAGGTGCTGGCGGGGGAGCGTGTCATCGACCCCACGCTGGCGG
CGGCCGCGCTGGCCGAGGGCGCCAATCCCCTGACCGACCGCGAACGCGAGGTCCTGCGCGCCGCGGCCGACGGCTCCACC
AACGCCGAACTGGCCAAGGCACTCCACCTCTCCCAGGGCACGGTCCGCAACTACCTCTCGACCGCGATCCAGAAGCTGGC
GGCCCGCAACAGGGCGGAGGCGGTACGGATCGCGCGGGAGAAGGGCTGGCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(143-198)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.842

100

0.377