Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   RFF25_RS01590 Genome accession   NZ_CP133633
Coordinates   333665..336058 (+) Length   797 a.a.
NCBI ID   WP_083002781.1    Uniprot ID   -
Organism   Pasteurella multocida strain Pm1618     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328665..341058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF25_RS01565 (RFF25_01565) - 328886..329596 (-) 711 WP_083002786.1 vancomycin high temperature exclusion protein -
  RFF25_RS01570 (RFF25_01570) - 329759..330841 (+) 1083 WP_324007763.1 homoserine O-acetyltransferase MetX -
  RFF25_RS01575 (RFF25_01575) folK 330828..331325 (-) 498 WP_010906894.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RFF25_RS01580 (RFF25_01580) pcnB 331337..332842 (-) 1506 WP_083002784.1 polynucleotide adenylyltransferase PcnB -
  RFF25_RS01585 (RFF25_01585) dksA 332930..333367 (-) 438 WP_010906892.1 RNA polymerase-binding protein DksA -
  RFF25_RS01590 (RFF25_01590) rec2 333665..336058 (+) 2394 WP_083002781.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RFF25_RS01595 (RFF25_01595) msbA 336111..337859 (+) 1749 WP_083002778.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  RFF25_RS01600 (RFF25_01600) lpxK 337891..338868 (+) 978 WP_083002776.1 tetraacyldisaccharide 4'-kinase -
  RFF25_RS01605 (RFF25_01605) - 338880..339062 (+) 183 WP_083002774.1 Trm112 family protein -
  RFF25_RS01610 (RFF25_01610) kdsB 339064..339840 (+) 777 WP_083002771.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91059.40 Da        Isoelectric Point: 9.8674

>NTDB_id=875323 RFF25_RS01590 WP_083002781.1 333665..336058(+) (rec2) [Pasteurella multocida strain Pm1618]
MKNTLLSISVVTVLSACSLLWLPEHVLLHWHMTLLVFVLLLVSIIICVLCGKNHWISPLIFVLSSVGILGYIHDQARQTL
LQADLIAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLIPQQAKQKMFLQWHAQEKAQIGEVWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLQETIKQTSTLDYQGLLIALAFGERAWLPTDIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRFIQFVLPLKWVTPTLPIFVGLLFAWFYAELAGFTIPTTRAFFALAVVTLLRLWRRFYSVWQLL
LLVVALLLLANPLIVLSSSFWLSVSAVSALIIWYQIFPFSLLHWRGKSLTEGPWRKCCWFFSLLHLQLGLLWLFTPVQLL
LFQGISLTSFMANVLVVPIYSVILVPLILFAVITQGAFSSWFLANTVAKQVTILLTPLQSHWVVFSQREILCLIAILALS
FIILIWYLYDFKKESLKCYIKVPRFFHLNQMRQLNPSLKWKIYSLATVISLYCFLQVLYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIALEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQHLTFKALSPTKTVKRAKNTDSCVLLISDGSYHILLTGDADIAAEKQFVKQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTTVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=875323 RFF25_RS01590 WP_083002781.1 333665..336058(+) (rec2) [Pasteurella multocida strain Pm1618]
ATGAAAAACACTCTTTTGTCAATATCTGTTGTGACTGTATTAAGTGCATGTTCGTTACTTTGGCTACCTGAACATGTCTT
GCTCCATTGGCATATGACATTGTTAGTCTTCGTATTATTGCTTGTTAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTTTGATCTTTGTACTGAGTTCAGTAGGCATTTTAGGCTATATCCACGATCAAGCTCGTCAGACATTA
TTGCAAGCTGACTTGATTGCTCAACTGCCTCGAAAGATAGAGACTGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTAGTTTCGGCACAATTGATACCGCAACAGGCAAAACAAAAAATGTTTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATTGGCGAAGTTTGGAAAGGAGAGCTGCGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCGACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTACAAGAAACGATAAAACAGACCTCAACATTAGACTATCAAGGACTGTTAATCGCGTTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGATATTTGGCAAACTTATCAAAAAACTAGCACAGCACATGTGATTGCCATA
TCGGGTTTACATATTGGACTTGCGATGGGAATAGGTTATTTTTTTATCCGTTTCATTCAGTTTGTGTTGCCATTAAAGTG
GGTGACACCAACCTTACCAATATTCGTAGGGCTTCTTTTTGCCTGGTTTTATGCGGAGCTAGCGGGTTTTACTATACCGA
CGACAAGAGCATTTTTCGCTCTCGCCGTTGTCACTTTGCTACGACTCTGGCGGCGATTTTATAGTGTTTGGCAACTTCTT
TTATTGGTAGTTGCTTTGTTATTGTTAGCAAATCCCTTAATTGTTTTATCCAGTAGCTTTTGGCTGTCAGTGAGCGCAGT
CAGTGCTCTGATTATTTGGTACCAAATATTCCCCTTCTCGTTATTACACTGGCGAGGAAAAAGTCTTACAGAGGGTCCTT
GGCGAAAATGTTGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTATGGCTTTTTACCCCTGTTCAATTATTG
CTTTTTCAGGGAATATCTTTAACAAGCTTTATGGCGAATGTGCTTGTCGTCCCTATTTATAGTGTGATTTTAGTACCATT
GATTTTATTTGCGGTGATCACACAAGGGGCTTTTTCCTCTTGGTTTCTCGCAAATACTGTCGCGAAACAGGTCACGATAC
TTTTAACGCCATTACAATCCCATTGGGTTGTCTTCTCACAGCGGGAAATACTCTGTCTGATCGCGATCTTAGCTTTAAGC
TTTATTATATTGATTTGGTATCTGTATGATTTTAAAAAAGAATCACTTAAGTGCTATATCAAAGTGCCGCGTTTTTTTCA
TCTTAATCAAATGCGGCAGTTAAATCCGTCTTTAAAATGGAAAATTTATTCCCTTGCTACAGTCATCAGTCTTTATTGTT
TTTTACAGGTACTTTATAAGGAGATATCTCAACCCCTTTGGCGTTTAGATACGCTCGATGTGGGGCAGGGGTTAGCTAAC
CTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCATCTTGGGCGGGAGGAAGTATGGCAGAACTAGAAAT
CATCCCTTATTTACAAAGAGAAGGGATTGCGTTAGAACAGGTGATTTTAAGTCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACAGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGCAAAACTTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAACAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTTATCATATCCTTTTAACGGGCGATGCAGATATTGCTG
CGGAAAAGCAGTTCGTGAAGCAGTTAAGTCAACTTGATGTATTACAAGTTGGACATCATGGCAGTAAAACCTCAACTGGA
TATGAACTGCTTTATCAAACACGACCAAAAATCGCGCTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGACAGTATATAACACTGGCGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCAAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Domain of unknown function (DUF4131) (DUF4131)

(32-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.128

100

0.512