Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WJM95_RS17920 Genome accession   NZ_CP149798
Coordinates   4101294..4102703 (-) Length   469 a.a.
NCBI ID   WP_339130723.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4096294..4107703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS17895 (WJM95_17895) - 4096583..4097203 (-) 621 WP_339135655.1 hypothetical protein -
  WJM95_RS17900 (WJM95_17900) - 4097224..4097763 (-) 540 WP_339130720.1 SigE family RNA polymerase sigma factor -
  WJM95_RS17905 (WJM95_17905) - 4098018..4098935 (-) 918 WP_339130721.1 A/G-specific adenine glycosylase -
  WJM95_RS17910 (WJM95_17910) - 4099127..4099978 (+) 852 WP_339130722.1 hypothetical protein -
  WJM95_RS17915 (WJM95_17915) disA 4100101..4101225 (-) 1125 WP_037625884.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  WJM95_RS17920 (WJM95_17920) radA 4101294..4102703 (-) 1410 WP_339130723.1 DNA repair protein RadA Machinery gene
  WJM95_RS17925 (WJM95_17925) - 4103106..4104896 (+) 1791 WP_339130724.1 hypothetical protein -
  WJM95_RS17930 (WJM95_17930) - 4104948..4105796 (-) 849 WP_339130725.1 hypothetical protein -
  WJM95_RS17935 (WJM95_17935) - 4105922..4106854 (+) 933 WP_339130726.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49497.70 Da        Isoelectric Point: 8.2550

>NTDB_id=875321 WJM95_RS17920 WP_339130723.1 4101294..4102703(-) (radA) [Streptomyces sp. f51]
MAARTKSAKDRPSYRCTECGWQTAKWLGRCAECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGQVDARQAAARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDIPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVLEVADIGAALSVLPRSRRREAPRDEEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=875321 WJM95_RS17920 WP_339130723.1 4101294..4102703(-) (radA) [Streptomyces sp. f51]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCGCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGCACGACCGCGCCGGGCC
GGGTCACCACCTCCGCGCTGCCCATCGGACAGGTCGACGCCCGTCAGGCCGCCGCCCGCAGCACCGGCGTGCCCGAGCTC
GACCGTGTCCTCGGCGGGGGTCTCGTGCCCGGGGCCGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCCGCCAAGTCGGCGAGTGACGAACACCGCACCCTGTATGTGACGGGCGAGGAGTCGGCCAGTCAGG
TGCGGCTGCGCGCGGACCGCATCAAGGCGATCGACGACCACCTCTATCTCGCCGCGGAGACCGATCTGGCGGCGGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGGCGC
GCCCGGTGGCATGGCGCAGGTCCGCGAGGTGGCGGGCGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTGC
TCGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGGCCCCGGCTGCTCGAACACCTCGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTGGTGCGCGGAGTCAAGAACCGCTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCGCGGACCCGTCGGGGCTCTTCCTCACGCGCCGCGCCGAGCCCGTCCCCG
GCACCTGTCTGACCGTCACGCTCGAAGGCCGCCGTCCGCTGGTCGCCGAGGTCCAGGCGCTCACCGTGGACTCCCAGATC
CCCTCCCCGCGCCGGACGACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGGGGCAA
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCGGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCGTCGCGCTCGCCCTGGCGTCCGCCGCCAGTGACATCCCGCTGCCCAAGAACCTGGTCGCGATCGGCGAGGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCCGGCTGGCCGAGGCCCACCGGCTGGGCTTCACGCACGCCCTCGT
GCCGACCGACCCGGGCAAGGTCCCGGCCGGTATGAAGGTCCTGGAAGTGGCCGACATCGGCGCGGCTCTGAGTGTCCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGACGAGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(76-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.699

96.375

0.412
  radA Streptococcus mitis SK321

44.366

90.832

0.403
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403