Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WJM95_RS07225 Genome accession   NZ_CP149798
Coordinates   1611789..1614854 (-) Length   1021 a.a.
NCBI ID   WP_339128691.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606789..1619854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS07200 (WJM95_07200) - 1607140..1607598 (-) 459 WP_339128685.1 hypothetical protein -
  WJM95_RS07205 (WJM95_07205) - 1607838..1608785 (+) 948 WP_339128686.1 hypothetical protein -
  WJM95_RS07210 (WJM95_07210) - 1608835..1609263 (-) 429 WP_339128687.1 Rieske (2Fe-2S) protein -
  WJM95_RS07215 (WJM95_07215) - 1609610..1610680 (+) 1071 WP_339128688.1 LacI family DNA-binding transcriptional regulator -
  WJM95_RS07220 (WJM95_07220) - 1610677..1611588 (+) 912 WP_339128690.1 carbohydrate kinase -
  WJM95_RS07225 (WJM95_07225) uvrA 1611789..1614854 (-) 3066 WP_339128691.1 excinuclease ABC subunit UvrA Machinery gene
  WJM95_RS07230 (WJM95_07230) - 1615078..1615767 (+) 690 WP_339128693.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  WJM95_RS07235 (WJM95_07235) - 1615777..1616433 (+) 657 WP_339128695.1 MBL fold metallo-hydrolase -
  WJM95_RS07240 (WJM95_07240) - 1616736..1617620 (+) 885 WP_339128697.1 ABC transporter substrate-binding protein -
  WJM95_RS07245 (WJM95_07245) - 1617617..1618648 (+) 1032 WP_339128698.1 amino acid ABC transporter permease -
  WJM95_RS07250 (WJM95_07250) - 1618645..1619412 (+) 768 WP_339128700.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1021 a.a.        Molecular weight: 112112.57 Da        Isoelectric Point: 7.9802

>NTDB_id=875294 WJM95_RS07225 WP_339128691.1 1611789..1614854(-) (uvrA) [Streptomyces sp. f51]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECRRPISRQSPQAIVDKVLELPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSEPPTLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLAGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPECTGIGTRMEVDPELIVPDEDKSLDEGAIHAWSHGHTK
DYFGRLIGALADALGFRTDIPFAGLPQRAKKALLYGHKTQIEVRYRNRYGRERVYTTPFEGAVPFVKRRHSESESDASRE
RFEGYMREVPCPTCQGTRLKPLVLAVTVMEKSIAEVAAMSISDCADFLGELKLNARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WVVDIGPGAGEHGGKVVHSGPLKELLANTESMTGQYLSRKRQIPTPDIRRPSDPGRVLTVHGARENNLRDIDVSFPLGVL
TAVTGVSGSGKSTLVNDILYTHLARELNGARNVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLFA
ETTEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSISEVLDMPIEEA
LDFFEAVPAIARHLRTLNDVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLITVLS
GLVDKGNTVIVIEHNLDVIKTADWVIDMGPEGGNGGGLVIAEGTPEEVAGVPASHTGKFLREILGADRISDAAPVKAPRK
TAARKTVAAGTTARKTATKTVDGTATKKAAATKKTAAKKTATTAAAKKVTPAKKTTRARKA

Nucleotide


Download         Length: 3066 bp        

>NTDB_id=875294 WJM95_RS07225 WP_339128691.1 1611789..1614854(-) (uvrA) [Streptomyces sp. f51]
GTGGCCGACCGTCTCATCGTCCGTGGAGCGCGCGAGCACAACCTGAAGAATGTCTCGCTCGACCTCCCGCGCGACTCGCT
CATCGTGTTCACGGGCCTGTCGGGGTCGGGCAAGTCCTCCCTCGCCTTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAGTCCCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTGGACTTCATCGAAGGTCTC
TCCCCGGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTATCTGCGGCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGCCCCGAGTGCCGCCGTCCCATCTCGCGTCAGTCGCCCC
AGGCCATCGTCGACAAGGTGCTGGAGCTTCCCGAGGGAAGCCGCTTCCAGGTCCTCTCGCCCCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGGTACAGCCGTGCCCGGGTCGACGGCGAGACCATCCAGCT
CAGCGAGCCGCCGACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGTCTCACGGTGAAGGACTCCG
CCAAGCGCCGTCTCACCGACTCCGTGGAGACCGCCCTCGGCCTGGCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCACCTGTACTGCCCGTACGACGATCTGTCCTTCGAGGAACT
GGAGCCCCGCTCCTTCTCCTTCAACTCGCCGTTCGGCGCCTGCCCCGAGTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCGGACGAGGACAAGTCCCTGGACGAGGGCGCCATCCACGCCTGGTCGCACGGCCACACCAAG
GACTACTTCGGCCGGCTGATCGGCGCGCTGGCGGACGCGCTGGGCTTCCGGACCGACATCCCCTTCGCCGGACTGCCGCA
GCGCGCGAAGAAGGCCCTCCTTTATGGCCACAAGACGCAGATCGAGGTCCGTTACCGCAACCGGTACGGACGCGAGCGCG
TGTACACCACGCCCTTCGAGGGGGCCGTCCCCTTCGTCAAGCGGCGCCACAGCGAGTCCGAGAGCGACGCCAGCCGCGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGCCAGGGCACGCGCCTGAAGCCGCTGGTCCTCGCCGTCAC
GGTCATGGAGAAGTCCATCGCCGAGGTCGCCGCCATGTCCATCAGCGACTGCGCGGACTTCCTCGGGGAGCTGAAGCTCA
ACGCGCGCGACAAGAAGATCGCCGAGCGCGTGCTGAAGGAGGTCAACGAACGGCTGCGCTTCCTGGTCGACGTGGGCCTC
GACTATCTGTCGCTGAACCGCGCGGCCGGCACGCTCTCCGGCGGCGAGGCGCAGCGCATCCGCCTGGCCACCCAGATCGG
CTCCGGACTCGTCGGCGTCCTGTACGTCCTGGACGAGCCCTCCATCGGTCTGCACCAGCGGGACAACCACCGGCTGATCG
AGACCCTCGTCCGCCTGCGGGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACGATCAAGGTCGCCGAC
TGGGTCGTCGACATCGGTCCCGGCGCGGGCGAGCACGGCGGCAAGGTCGTGCACAGCGGTCCCCTGAAGGAGCTCCTCGC
CAACACCGAGTCGATGACCGGGCAGTACCTGTCACGCAAGCGGCAGATCCCGACCCCGGACATCCGGCGTCCCTCCGACC
CCGGTCGCGTGCTCACCGTGCACGGCGCCCGGGAGAACAATCTCCGGGACATCGACGTGTCCTTCCCGCTGGGCGTCCTC
ACCGCCGTGACCGGCGTGTCGGGCTCCGGCAAGTCCACTCTGGTCAACGACATCCTGTACACGCACCTGGCCCGCGAGCT
GAACGGCGCGAGGAACGTGCCGGGACGCCACACGCGCGTGGACGGGGACGACCTCGTCGACAAGGTCGTGCACGTCGACC
AGTCGCCCATCGGCCGTACGCCCCGCTCCAACCCGGCGACGTACACCGGAGTCTTCGACCACGTCCGCAAGCTGTTCGCC
GAGACCACCGAGGCGAAGGTGCGGGGCTATCTGCCCGGCCGCTTCTCCTTCAACGTCAAGGGCGGGCGCTGCGAGAACTG
CTCGGGCGACGGCACCATCAAGATCGAGATGAACTTCCTGCCGGACGTGTACGTCCCCTGCGAGGTCTGCCACGGGGCGC
GCTACAACCGGGAGACGCTGGAGGTCCACTACAAGGGCAAGTCCATCTCCGAGGTCCTGGACATGCCCATCGAGGAGGCG
CTGGACTTCTTCGAGGCGGTTCCGGCGATCGCCCGGCACCTCAGGACACTGAACGACGTCGGCCTCGGCTACGTCAGGCT
CGGACAGTCCGCGCCGACGCTGTCCGGCGGTGAGGCGCAGCGCGTCAAGCTCGCCAGCGAGCTCCAGAAGCGCTCCACCG
GCCGCACCGTGTACGTCCTGGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCAGCAAGCTCATCACGGTCCTGTCC
GGTCTCGTCGACAAGGGCAACACGGTCATCGTCATCGAGCACAACCTCGATGTCATCAAGACCGCGGACTGGGTCATCGA
CATGGGCCCCGAGGGCGGCAACGGCGGCGGTCTCGTGATCGCCGAGGGCACCCCCGAGGAGGTCGCGGGCGTTCCGGCCA
GCCACACCGGCAAGTTCCTGCGCGAGATCCTCGGCGCCGACCGGATCAGCGACGCCGCTCCCGTGAAGGCCCCCCGCAAG
ACGGCCGCCAGGAAGACGGTCGCCGCGGGGACGACGGCACGGAAGACGGCCACGAAGACCGTCGACGGCACGGCGACCAA
GAAGGCGGCCGCCACGAAGAAGACGGCCGCGAAGAAGACCGCCACGACAGCGGCGGCCAAGAAGGTGACGCCCGCGAAGA
AGACCACGCGGGCCCGGAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

ABC transporter (ABC_tran)

(628-864)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.46

92.556

0.532
  uvrA Streptococcus pneumoniae TIGR4

57.46

92.556

0.532
  uvrA Streptococcus pneumoniae D39

57.46

92.556

0.532