Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RCV51_RS01265 Genome accession   NZ_CP133611
Coordinates   259485..259862 (-) Length   125 a.a.
NCBI ID   WP_013177220.1    Uniprot ID   D7CTJ1
Organism   Truepera radiovictrix strain CIP 108686     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254485..264862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCV51_RS01235 (RCV51_01235) - 254793..256655 (-) 1863 WP_013177226.1 glycoside hydrolase family 2 protein -
  RCV51_RS01240 (RCV51_01240) - 257121..258062 (+) 942 WP_013177225.1 transcriptional regulator -
  RCV51_RS01245 (RCV51_01245) - 258195..258470 (+) 276 WP_013177224.1 hypothetical protein -
  RCV51_RS01250 (RCV51_01250) - 258496..258666 (+) 171 WP_013177223.1 hypothetical protein -
  RCV51_RS01255 (RCV51_01255) - 258797..259003 (-) 207 WP_013177222.1 hypothetical protein -
  RCV51_RS01260 (RCV51_01260) - 259018..259389 (-) 372 WP_013177221.1 pilin, type IV -
  RCV51_RS01265 (RCV51_01265) pilV 259485..259862 (-) 378 WP_013177220.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RCV51_RS01270 (RCV51_01270) - 260202..260432 (+) 231 WP_013177219.1 DUF433 domain-containing protein -
  RCV51_RS15185 - 260429..260770 (+) 342 WP_013177218.1 DUF5615 family PIN-like protein -
  RCV51_RS01275 (RCV51_01275) - 260819..261214 (+) 396 WP_013177217.1 metallopeptidase family protein -
  RCV51_RS01280 (RCV51_01280) - 261219..261569 (+) 351 WP_013177216.1 DUF309 domain-containing protein -
  RCV51_RS01285 (RCV51_01285) - 261587..261880 (+) 294 WP_013177215.1 PspC domain-containing protein -
  RCV51_RS01290 (RCV51_01290) rbsK 261890..262789 (-) 900 WP_013177214.1 ribokinase -
  RCV51_RS01295 (RCV51_01295) - 262917..263852 (-) 936 WP_013177213.1 acetamidase/formamidase family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 12878.56 Da        Isoelectric Point: 4.8538

>NTDB_id=875283 RCV51_RS01265 WP_013177220.1 259485..259862(-) (pilV) [Truepera radiovictrix strain CIP 108686]
MRNAKGRQANQGFTLIELLIVIAIIGILAAVLIPNLLQARNRANDTAAQAYIRNCYTAVESQRDPVTQALPTAATCDALE
PGVPTPAAVTGPGTITADGNGGFSVAATSVTNTNFTFDGATMTSN

Nucleotide


Download         Length: 378 bp        

>NTDB_id=875283 RCV51_RS01265 WP_013177220.1 259485..259862(-) (pilV) [Truepera radiovictrix strain CIP 108686]
ATGCGCAACGCCAAAGGTCGCCAAGCCAACCAAGGTTTCACCCTTATCGAACTGCTGATCGTCATCGCCATTATCGGCAT
TCTCGCGGCGGTCCTCATTCCAAACCTCCTGCAGGCGCGCAACCGCGCGAACGATACCGCAGCCCAAGCCTACATCCGTA
ACTGCTACACGGCGGTCGAAAGCCAGCGCGACCCAGTGACGCAAGCGCTTCCAACCGCGGCGACCTGTGACGCGCTCGAG
CCTGGAGTTCCCACGCCTGCTGCGGTCACGGGACCGGGAACGATTACGGCTGACGGCAACGGTGGGTTCAGCGTCGCGGC
GACGAGCGTCACGAACACCAACTTCACCTTCGACGGCGCCACGATGACCTCGAACTAG

Domains

Predicted by InterproScan.

Pilin A4 (PilA4)

(44-124)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7CTJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.331

96.8

0.584