NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	WJM95_RS01245	Genome accession	NZ_CP149798
Coordinates	278407..279060 (+)	Length	217 a.a.
NCBI ID	WP_339127563.1	Uniprot ID	-
Organism	Streptomyces sp. f51
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 273407..284060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJM95_RS01225 (WJM95_01225)	-	273947..274963 (+)	1017	WP_339127559.1	zinc-binding alcohol dehydrogenase family protein	-
WJM95_RS01230 (WJM95_01230)	-	275135..276319 (+)	1185	WP_339127560.1	GAF domain-containing SpoIIE family protein phosphatase	-
WJM95_RS01235 (WJM95_01235)	-	276350..276832 (-)	483	WP_339127561.1	VOC family protein	-
WJM95_RS01240 (WJM95_01240)	-	277020..278258 (+)	1239	WP_339127562.1	epoxide hydrolase	-
WJM95_RS01245 (WJM95_01245)	clpP	278407..279060 (+)	654	WP_339127563.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WJM95_RS01250 (WJM95_01250)	clpP	279062..279664 (+)	603	WP_339127564.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WJM95_RS01255 (WJM95_01255)	-	279695..280162 (-)	468	WP_339127565.1	helix-turn-helix transcriptional regulator	-
WJM95_RS01260 (WJM95_01260)	-	280280..281629 (-)	1350	WP_339127566.1	DUF6777 domain-containing protein	-
WJM95_RS01265 (WJM95_01265)	-	281794..283089 (+)	1296	WP_339127567.1	streptophobe family protein	-

Sequence

Protein

Download Length: 217 a.a. Molecular weight: 23622.56 Da Isoelectric Point: 5.3353

                                >NTDB_id=875283 WJM95_RS01245 WP_339127563.1 278407..279060(+) (clpP) [Streptomyces sp. f51]

MTPLSTGLYPDRSPRAEEGDTPTTRYDDHLAAQLLAQRIVFLGTQVDEVSANRVCAQLLLLSAEDARSDISLYINSPGGS

VTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGARGKRFALPNARIMMHQPSAGIGGTTADIEIQAQNHEFTKRAI

ERITAEHTGQSEETISRDGDRDRWFTAEQAREYGMVDRVVESLADVRPAAARRRAGL

Nucleotide

Download Length: 654 bp

                                >NTDB_id=875283 WJM95_RS01245 WP_339127563.1 278407..279060(+) (clpP) [Streptomyces sp. f51]

ATGACTCCGCTCAGCACCGGCCTGTACCCGGACCGCTCACCGCGCGCCGAGGAGGGCGACACCCCCACGACCCGCTACGA

CGACCATCTGGCCGCGCAGTTGCTCGCCCAGCGGATCGTCTTCCTGGGCACCCAGGTCGACGAGGTCTCCGCCAACCGTG

TGTGCGCCCAGTTGCTCCTGCTGTCCGCCGAGGACGCGCGCTCCGACATCAGCCTGTACATCAACAGCCCGGGCGGCTCG

GTGACCGCCGGACTCGCCATCTACGACACGATGCGGCTGATCCCCAACGACGTCTCCACCCTCGCGATGGGATTCGCCGC

GAGCATGGGGCAGTTCCTGCTCAGCGTGGGAGCGCGCGGCAAGCGCTTCGCCCTGCCGAACGCGCGGATCATGATGCACC

AGCCGTCCGCGGGGATCGGCGGCACCACCGCCGACATCGAGATCCAGGCGCAGAACCACGAGTTCACCAAGCGGGCCATC

GAACGCATCACCGCGGAGCACACGGGACAGAGCGAGGAGACGATCTCCAGGGACGGTGACCGCGACCGCTGGTTCACGGC

GGAACAGGCGAGGGAGTACGGCATGGTGGACCGGGTCGTGGAGTCGCTCGCCGACGTCCGCCCGGCCGCGGCACGGCGAC

GGGCGGGGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-201)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	48.901	83.871	0.41
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.718	81.567	0.406
clpP	Streptococcus pneumoniae Rx1	48.023	81.567	0.392
clpP	Streptococcus pneumoniae D39	48.023	81.567	0.392
clpP	Streptococcus pneumoniae R6	48.023	81.567	0.392
clpP	Streptococcus pneumoniae TIGR4	48.023	81.567	0.392
clpP	Lactococcus lactis subsp. cremoris KW2	45.81	82.488	0.378
clpP	Streptococcus pyogenes JRS4	45.81	82.488	0.378
clpP	Streptococcus pyogenes MGAS315	45.81	82.488	0.378
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.251	82.488	0.373
clpP	Streptococcus mutans UA159	45.251	82.488	0.373
clpP	Streptococcus thermophilus LMG 18311	45.198	81.567	0.369
clpP	Streptococcus thermophilus LMD-9	45.198	81.567	0.369

Detailed information NTG0875283