Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RE628_RS13890 Genome accession   NZ_CP133605
Coordinates   2729835..2731637 (+) Length   600 a.a.
NCBI ID   WP_309159198.1    Uniprot ID   -
Organism   Paenibacillus sp. D2_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2724835..2736637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE628_RS13875 (RE628_13875) - 2726237..2726911 (+) 675 WP_309159195.1 response regulator transcription factor -
  RE628_RS13880 (RE628_13880) - 2726908..2727975 (+) 1068 WP_309159196.1 HAMP domain-containing sensor histidine kinase -
  RE628_RS13885 (RE628_13885) rcrP 2728019..2729779 (+) 1761 WP_309159197.1 ABC transporter ATP-binding protein Regulator
  RE628_RS13890 (RE628_13890) rcrQ 2729835..2731637 (+) 1803 WP_309159198.1 ABC transporter ATP-binding protein Regulator
  RE628_RS13895 (RE628_13895) - 2731719..2733047 (-) 1329 WP_309159199.1 MFS transporter -
  RE628_RS13900 (RE628_13900) - 2733077..2733859 (-) 783 WP_309159200.1 hypothetical protein -
  RE628_RS13905 (RE628_13905) - 2733861..2734022 (-) 162 WP_309159201.1 hypothetical protein -
  RE628_RS13910 (RE628_13910) - 2734019..2734543 (-) 525 WP_309159202.1 family 20 glycosylhydrolase -
  RE628_RS13915 (RE628_13915) - 2734567..2735034 (-) 468 WP_375143081.1 glycoside hydrolase family 20 zincin-like fold domain-containing protein -
  RE628_RS13920 (RE628_13920) - 2735390..2736379 (+) 990 WP_309159204.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66182.01 Da        Isoelectric Point: 6.7783

>NTDB_id=875268 RE628_RS13890 WP_309159198.1 2729835..2731637(+) (rcrQ) [Paenibacillus sp. D2_2]
MHGPAEKPKDFKSTWGKLIKYCKNYMPVIVIALIIAAVGTVLQIIGPDKLKDMTNEITKGLPALINGQPVVGAIDMDAVV
NIAMLLVFFYASSGLLSFIQNYIMATVTAKISKNMRTGISQKINKLPLKYFDKTSYGDVLSRATNDVDTIGQTLNQSIGT
MVSAITMFVGSLVMMFYTNWILALTAIGSTIIGFVLMMLIMSKSKKHFTAQQEGLGEINGHIEEVYSGHNVVKAYNGGKA
AKETFEKINKTLYDSGWKSQFLSGLMMPIMSFIGNLGYLAVCVVGAVLAMNGTISFGVIVAFMLYIRLFTQPLAQLAQAA
QTMLRTAAASERVFEFFEEEEMADESEKAKKLANVKGDVEFKHVKFGYDKDKTIIHDFSAMVRAGQKVAIVGPTGAGKTT
MINLLMRFYELDGGEILLDGIPTHETTRENVHEQFCMVLQDTWLFEGTIKDNIKYSKQGVTDEEVITACKAVGLHHFIRT
LPDGYNTVLNDQASLSAGQKQLLTIARAMIQNAPLLILDEATSSVDTRTERKVQEAMDKLMVGRTSFVIAHRLSTIRNAD
MILVMKDGDIIESGNHVELLEQGGFYADLYNSQFEVQQAI

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=875268 RE628_RS13890 WP_309159198.1 2729835..2731637(+) (rcrQ) [Paenibacillus sp. D2_2]
ATGCATGGTCCGGCCGAAAAGCCAAAAGACTTCAAAAGTACATGGGGCAAATTGATTAAATATTGTAAAAATTATATGCC
CGTCATTGTGATTGCACTCATTATCGCGGCCGTCGGTACTGTATTACAAATCATAGGGCCGGATAAATTAAAGGACATGA
CCAATGAAATTACCAAGGGGCTTCCCGCGCTGATAAACGGGCAACCTGTCGTAGGTGCAATTGATATGGATGCCGTAGTG
AATATTGCCATGTTGCTCGTATTCTTCTACGCGTCCTCTGGGTTGTTAAGTTTTATTCAAAACTATATTATGGCAACTGT
AACAGCTAAAATATCCAAAAATATGCGGACCGGCATTTCTCAAAAAATCAATAAATTACCGCTTAAATACTTTGATAAAA
CAAGCTATGGCGATGTACTCAGCCGTGCGACTAATGACGTTGATACGATAGGACAAACGTTAAATCAAAGCATCGGTACA
ATGGTCAGCGCAATAACCATGTTTGTTGGTTCTCTGGTTATGATGTTCTACACGAACTGGATTCTGGCGTTGACCGCGAT
CGGTTCTACCATTATCGGCTTTGTATTAATGATGTTGATCATGTCAAAATCAAAGAAACATTTTACAGCACAACAAGAAG
GCCTTGGTGAAATCAATGGTCATATTGAAGAGGTTTATTCGGGACATAATGTTGTTAAAGCCTATAACGGTGGCAAGGCG
GCAAAAGAAACATTCGAGAAAATTAATAAAACTCTATATGACAGCGGCTGGAAGTCTCAATTTCTGTCGGGATTAATGAT
GCCTATTATGAGCTTTATTGGTAACTTAGGTTATCTAGCCGTGTGCGTAGTCGGAGCAGTACTTGCCATGAACGGGACTA
TTTCCTTTGGTGTAATCGTAGCGTTTATGTTGTATATACGCCTGTTCACGCAGCCGCTTGCGCAGTTAGCCCAAGCAGCT
CAAACGATGTTAAGAACCGCTGCCGCAAGCGAGCGCGTCTTTGAATTTTTCGAAGAAGAAGAAATGGCAGATGAAAGCGA
AAAAGCAAAAAAACTTGCTAATGTCAAAGGCGACGTAGAATTTAAACACGTTAAATTCGGCTACGATAAGGATAAAACGA
TAATCCACGACTTCTCAGCCATGGTCAGAGCAGGGCAAAAAGTCGCAATCGTCGGCCCGACAGGGGCAGGAAAAACGACG
ATGATTAACCTTTTAATGCGTTTCTACGAGCTGGATGGAGGCGAGATATTGCTGGACGGTATACCTACGCATGAAACTAC
TAGAGAAAACGTACACGAACAATTCTGCATGGTATTGCAAGACACATGGCTTTTTGAGGGAACGATCAAAGATAACATCA
AATATAGCAAGCAAGGCGTGACGGATGAGGAAGTCATTACCGCATGTAAAGCAGTCGGATTGCATCATTTTATACGAACG
CTTCCCGATGGCTACAATACAGTATTGAATGACCAAGCAAGCTTATCGGCAGGACAAAAACAGCTTCTTACTATCGCGCG
AGCCATGATCCAAAATGCACCGCTCTTGATTCTAGATGAAGCGACAAGCTCGGTCGATACACGCACGGAACGTAAAGTGC
AGGAAGCAATGGATAAGCTAATGGTTGGTAGAACATCATTTGTTATTGCACACAGACTTTCGACCATACGCAACGCTGAT
ATGATTCTTGTCATGAAGGATGGCGATATTATAGAAAGCGGCAATCACGTCGAGCTTCTAGAACAAGGCGGATTCTACGC
GGACCTGTATAACAGCCAGTTTGAAGTACAACAGGCTATATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-313)

ABC transporter (ABC_tran)

(376-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.29

97.167

0.557