Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RE628_RS13885 Genome accession   NZ_CP133605
Coordinates   2728019..2729779 (+) Length   586 a.a.
NCBI ID   WP_309159197.1    Uniprot ID   -
Organism   Paenibacillus sp. D2_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2723019..2734779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE628_RS29650 - 2723176..2723379 (-) 204 WP_375143114.1 LysM peptidoglycan-binding domain-containing protein -
  RE628_RS13865 (RE628_13865) - 2723337..2723543 (-) 207 WP_309159193.1 hypothetical protein -
  RE628_RS13870 (RE628_13870) - 2723714..2726086 (-) 2373 WP_309159194.1 ATP-binding cassette domain-containing protein -
  RE628_RS13875 (RE628_13875) - 2726237..2726911 (+) 675 WP_309159195.1 response regulator transcription factor -
  RE628_RS13880 (RE628_13880) - 2726908..2727975 (+) 1068 WP_309159196.1 HAMP domain-containing sensor histidine kinase -
  RE628_RS13885 (RE628_13885) rcrP 2728019..2729779 (+) 1761 WP_309159197.1 ABC transporter ATP-binding protein Regulator
  RE628_RS13890 (RE628_13890) rcrQ 2729835..2731637 (+) 1803 WP_309159198.1 ABC transporter ATP-binding protein Regulator
  RE628_RS13895 (RE628_13895) - 2731719..2733047 (-) 1329 WP_309159199.1 MFS transporter -
  RE628_RS13900 (RE628_13900) - 2733077..2733859 (-) 783 WP_309159200.1 hypothetical protein -
  RE628_RS13905 (RE628_13905) - 2733861..2734022 (-) 162 WP_309159201.1 hypothetical protein -
  RE628_RS13910 (RE628_13910) - 2734019..2734543 (-) 525 WP_309159202.1 family 20 glycosylhydrolase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65005.68 Da        Isoelectric Point: 5.4487

>NTDB_id=875267 RE628_RS13885 WP_309159197.1 2728019..2729779(+) (rcrP) [Paenibacillus sp. D2_2]
MIKIFKYLKPKEWIQAVISLVFIVVQVWLDLKLPDYMAEITQLVQTSGSEMSEIWKAGGYMLLCALGSLVSAILVGFFAA
RIASSFSQRLRSLLFNKVESFSMEEINRFSTSSLITRSTNDITQIQMLVTMGLQIIIKAPIMAVWAVTKIAGKGFEWTLA
TGVAVLILLVLIAFIMVFVLPKFRKMQTLTDNLTRVARENLTGLRVVRAYNAEDYQEQKFEKANEELTYTNLFTNRAMSV
MMPVMSMIMSGLSLAIYWIGAYLINAAEATDRLTLFSNMVVFSSYAMQVIMAFLMLVMIFIMLPRASVSAKRVNEVLDTQ
PTIKDGHVNEGLQGLKGEVTFNHVSFKYPDAADYVIEDVSFTVKQGETIAFIGSTGSGKSTLINLVPRFFDVTEGEVLID
GVNVKEYSIESLNNKIGYVPQKAVMFKGTVSSNVAFGDNGSAGYSEDEVKKAVQIAQGADFVEKMDDGYNALISQGGTNV
SGGQKQRLAIARAVCRKPEIYIFDDSFSALDYKTDRVLRSVLKKETAGVTSMIVAQRIGTIMDADQIIVLDEGKVVGNGT
HKELLRDCDVYREIAMSQLSEEELIS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=875267 RE628_RS13885 WP_309159197.1 2728019..2729779(+) (rcrP) [Paenibacillus sp. D2_2]
ATGATAAAGATTTTTAAGTATCTCAAGCCCAAGGAATGGATACAAGCAGTTATCAGTCTTGTATTCATTGTCGTGCAAGT
ATGGCTTGATTTGAAATTACCGGATTACATGGCTGAAATTACTCAGCTTGTCCAAACCTCAGGTAGTGAGATGAGTGAAA
TCTGGAAAGCCGGAGGTTATATGCTCCTGTGTGCGCTGGGGAGTCTTGTGTCCGCTATCCTGGTTGGCTTTTTTGCAGCA
CGGATTGCATCGTCTTTCTCGCAAAGGCTTCGTAGTCTGCTGTTTAACAAGGTCGAATCCTTTTCAATGGAGGAAATAAA
CCGCTTTTCTACTTCGAGTCTGATTACCCGTTCTACAAACGATATTACGCAGATTCAGATGCTTGTCACCATGGGATTAC
AAATCATCATCAAAGCGCCGATCATGGCGGTCTGGGCCGTTACAAAGATTGCTGGAAAAGGATTTGAATGGACACTTGCG
ACGGGTGTAGCTGTTTTGATTTTGCTGGTCTTGATCGCGTTTATTATGGTATTTGTCCTGCCGAAATTCAGAAAAATGCA
GACGCTCACCGACAACTTAACTCGCGTGGCTAGGGAAAACCTTACAGGCTTGCGCGTAGTTCGAGCTTATAACGCCGAGG
ATTATCAGGAACAAAAGTTTGAAAAGGCTAACGAAGAACTTACTTACACCAATTTGTTCACTAACCGTGCCATGTCGGTA
ATGATGCCGGTGATGAGTATGATTATGAGCGGACTTAGCCTTGCAATTTATTGGATTGGTGCATATCTAATCAATGCAGC
TGAAGCAACGGACCGATTGACGCTTTTCTCCAATATGGTTGTATTCTCATCCTACGCCATGCAAGTCATTATGGCCTTCT
TGATGCTAGTTATGATATTCATTATGCTTCCGAGAGCCAGCGTTTCCGCCAAACGTGTCAATGAGGTGCTGGATACGCAG
CCGACTATAAAAGACGGTCATGTTAACGAGGGCTTACAGGGATTAAAAGGCGAGGTCACATTCAATCATGTCAGCTTTAA
GTACCCGGATGCGGCTGATTATGTTATAGAGGATGTCAGTTTTACAGTAAAACAAGGTGAAACTATCGCGTTTATCGGCT
CAACCGGGAGCGGGAAATCAACCCTTATCAACCTTGTACCACGTTTTTTTGATGTGACTGAAGGCGAAGTACTGATTGAC
GGCGTGAATGTAAAAGAATATAGCATTGAATCGCTTAATAATAAAATTGGCTATGTGCCGCAAAAGGCTGTCATGTTCAA
AGGAACGGTGAGTTCCAACGTAGCCTTTGGAGATAATGGAAGCGCAGGTTACAGTGAAGATGAAGTTAAAAAAGCTGTAC
AGATAGCACAGGGCGCGGACTTTGTGGAAAAGATGGACGATGGTTACAATGCGCTGATTTCACAAGGTGGCACAAATGTA
TCGGGTGGTCAGAAACAACGTCTCGCGATTGCTCGCGCAGTCTGCCGTAAACCTGAAATATATATCTTCGATGATTCATT
TTCGGCGCTTGACTATAAAACAGATCGTGTTCTACGCAGCGTGCTGAAAAAGGAAACTGCTGGAGTGACAAGTATGATTG
TAGCACAGCGGATTGGAACCATCATGGACGCCGATCAAATTATTGTACTAGATGAAGGCAAAGTGGTGGGAAATGGAACT
CATAAGGAGCTGCTACGCGACTGTGATGTATACAGGGAAATCGCTATGTCACAATTGAGTGAGGAGGAATTGATATCATG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.376

100

0.573