Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WID27_RS05125 Genome accession   NZ_CP149796
Coordinates   1147829..1150114 (+) Length   761 a.a.
NCBI ID   WP_070201907.1    Uniprot ID   A0A1E7LRU0
Organism   Streptomyces sp. F41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142829..1155114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WID27_RS05100 (WID27_05100) - 1143843..1143989 (-) 147 WP_167372553.1 hypothetical protein -
  WID27_RS05105 (WID27_05105) - 1144083..1144775 (-) 693 WP_339151730.1 endonuclease V -
  WID27_RS05110 (WID27_05110) - 1144829..1145131 (+) 303 WP_339151731.1 YciI family protein -
  WID27_RS05115 (WID27_05115) - 1145383..1145799 (+) 417 WP_339151732.1 SsgA family sporulation/cell division regulator -
  WID27_RS05120 (WID27_05120) - 1146060..1147691 (+) 1632 WP_339151733.1 ATP-binding cassette domain-containing protein -
  WID27_RS05125 (WID27_05125) uvrA 1147829..1150114 (+) 2286 WP_070201907.1 excinuclease ABC subunit UvrA Machinery gene
  WID27_RS05130 (WID27_05130) - 1150275..1151249 (+) 975 WP_070201906.1 acyl-ACP desaturase -
  WID27_RS05135 (WID27_05135) - 1151382..1154762 (-) 3381 WP_339151734.1 hypothetical protein -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 81818.52 Da        Isoelectric Point: 6.0666

>NTDB_id=875220 WID27_RS05125 WP_070201907.1 1147829..1150114(+) (uvrA) [Streptomyces sp. F41]
MDHSTDRSITLTGAHENNLRDVSLTLPKGRITVFTGVSGSGKSSVVFDTIAVESQRQLNETFTSFLRNRLPKYERPRAES
MENLSVAVVIDQKPLGGNVRSTVGTATDIWSVLRVLFSRYGTPSAGGATAYSFNDPAGMCPECDGVGQVVRLDLDRAVDW
SKSLNEGALLLPGLGVGSWEWSLYGGSGRFDNDLPLGEFSEEDRQLLLYGSGFTVRVDMRTGSAEMRFEGVVTRFERLYL
KRDTASLSEKRRAAADRFTVERVCGSCDGARLNAAALATRVDGLSPADYGRMEVSELVGVLARIDDPVGGPIAAAARERL
ERLVGIGLGYLSLDRQTSTLSGGEGQRLKMVRHLGSSLTGLTFVFDEPSVGLHPRDVGRLGDLLVRLRDKGNTVLVVEHD
PDVMAVADHIVDMGPRAGSEGGHVVFEGPFDRLRASDTLTGRSLRRRTPLKSEFRSPTGQLPVRGADLHNLKGLDVSFPA
GVLTVVTGVAGSGKSTLVSEVFTAAHPEAVVIDQSAITASSRSTPASYIGALDTIRKVFARENGVDAGLFSFNSAGACPG
CAGRGEISTDLAFMDPVTTTCRECEGRRFHDDVLKHRVGGRSIVDVLEMTAAQAVDLFEDRALLRKLRTLDEVGLTYLTL
GQPLSTLSGGERQRIKLATQLHRTSSVYVLDEPTTGLHLADTGALVDLLDRLVDAGNTVVCVEHNLEVVKRADWVIDLGP
DGGKKGGELVFAGTPEGLLADRTSVTAEYLRRDLGLPAQPR

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=875220 WID27_RS05125 WP_070201907.1 1147829..1150114(+) (uvrA) [Streptomyces sp. F41]
ATGGATCACAGCACCGACCGCTCCATCACCCTCACCGGAGCGCACGAGAACAATCTGCGCGATGTCTCCCTCACCCTGCC
CAAGGGCCGGATCACCGTCTTCACGGGGGTGTCCGGCTCGGGGAAGTCGTCGGTCGTCTTCGACACGATCGCCGTGGAGT
CCCAGCGGCAGCTGAACGAGACCTTCACCTCCTTCCTGCGCAACCGGCTGCCGAAGTACGAGCGTCCCCGGGCGGAGTCC
ATGGAGAACCTGTCCGTGGCCGTCGTCATCGACCAGAAGCCGCTGGGCGGCAACGTCCGCTCGACCGTGGGCACGGCCAC
GGACATCTGGTCGGTGCTCCGGGTGCTGTTCTCCCGCTACGGCACCCCGAGCGCGGGCGGGGCCACCGCGTACTCCTTCA
ACGACCCGGCGGGGATGTGCCCGGAGTGCGACGGGGTGGGCCAGGTGGTCCGGCTCGATCTGGACCGGGCGGTGGACTGG
TCGAAGTCGCTGAACGAGGGGGCGCTGCTGCTGCCCGGGCTGGGGGTCGGCAGCTGGGAGTGGAGCCTGTACGGCGGGTC
GGGGCGGTTCGACAACGACCTGCCGCTGGGGGAGTTCAGCGAGGAGGACCGGCAACTCCTGTTGTACGGTTCCGGGTTCA
CCGTCCGGGTCGACATGCGGACCGGGTCGGCGGAGATGCGGTTCGAGGGGGTGGTGACCCGGTTCGAGCGGCTCTACCTC
AAGCGGGACACGGCCTCGCTCTCGGAGAAGCGGCGCGCGGCGGCCGACCGGTTCACCGTCGAGCGGGTCTGCGGCTCCTG
CGACGGGGCGCGGCTGAACGCGGCGGCGCTCGCCACCCGGGTCGACGGGCTCTCGCCGGCCGACTACGGGCGGATGGAGG
TCTCCGAGCTGGTCGGCGTGCTGGCGCGGATCGACGACCCGGTGGGCGGTCCGATCGCGGCGGCGGCCCGTGAGCGGCTG
GAGCGGCTCGTGGGGATCGGGCTCGGCTATCTCAGCCTGGACCGGCAGACAAGCACCCTGTCGGGAGGCGAGGGCCAGCG
CCTCAAGATGGTCCGCCACCTGGGGAGTTCACTGACCGGGTTGACCTTCGTCTTCGACGAACCGAGCGTGGGGCTGCACC
CCCGGGACGTCGGGCGGCTCGGTGATCTGCTGGTGCGGCTGCGCGACAAGGGCAACACCGTGCTGGTGGTCGAGCACGAC
CCGGATGTGATGGCGGTGGCGGACCACATCGTCGACATGGGTCCGCGGGCGGGTTCGGAGGGCGGACACGTCGTCTTCGA
GGGGCCGTTCGACCGGCTGCGCGCGTCGGACACGCTCACCGGCCGGTCGCTGCGCCGACGCACCCCGCTCAAGAGCGAGT
TCCGCTCCCCCACCGGCCAACTCCCGGTGCGGGGCGCCGATCTGCACAACCTCAAGGGGCTGGACGTGTCGTTCCCGGCC
GGGGTGCTGACCGTGGTGACCGGGGTGGCGGGTTCGGGCAAGTCGACGCTGGTGTCGGAGGTGTTCACGGCGGCCCACCC
CGAGGCCGTGGTCATCGACCAGAGCGCCATCACCGCCTCGTCCCGCTCGACCCCGGCCTCGTACATCGGCGCGCTGGACA
CCATCCGCAAGGTCTTCGCCCGTGAGAACGGCGTCGACGCCGGGCTGTTCAGCTTCAACTCCGCCGGGGCGTGCCCGGGT
TGCGCGGGGCGCGGGGAGATCTCCACCGACCTGGCGTTCATGGACCCGGTCACCACGACCTGCCGGGAGTGCGAGGGGCG
CCGGTTCCACGACGACGTGCTGAAGCACCGGGTCGGCGGCCGGTCCATCGTCGACGTGCTGGAGATGACGGCGGCGCAGG
CGGTCGACCTCTTCGAGGACCGGGCGCTGCTGCGGAAACTGCGGACGCTCGACGAGGTCGGGCTCACCTACCTCACGCTC
GGGCAGCCGCTCAGCACGCTCTCCGGTGGCGAGCGCCAGCGGATCAAGCTGGCCACCCAGCTCCACCGCACCTCCAGCGT
GTACGTCCTGGACGAGCCGACGACCGGGCTGCACCTGGCCGACACGGGGGCGCTGGTGGATCTGCTGGACCGGCTGGTCG
ACGCGGGGAACACGGTGGTGTGCGTGGAGCACAACCTGGAGGTCGTGAAGCGGGCGGACTGGGTGATCGACCTCGGTCCG
GACGGCGGGAAGAAGGGCGGCGAGCTGGTCTTCGCGGGCACGCCGGAGGGGCTGCTGGCGGACCGCACCTCGGTTACCGC
CGAGTACCTGCGGCGGGATCTGGGGCTGCCCGCACAGCCCCGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(471-674)

UvrA DNA-binding domain (UvrA_DNA-bind)

(153-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7LRU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

37.922

100

0.384
  uvrA Streptococcus pneumoniae TIGR4

37.922

100

0.384
  uvrA Streptococcus pneumoniae D39

37.922

100

0.384