Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WID27_RS02985 Genome accession   NZ_CP149796
Coordinates   677367..679820 (+) Length   817 a.a.
NCBI ID   WP_339151510.1    Uniprot ID   -
Organism   Streptomyces sp. F41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672367..684820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WID27_RS02960 (WID27_02960) - 673434..673649 (+) 216 WP_019766825.1 dodecin -
  WID27_RS02965 (WID27_02965) - 673672..674160 (-) 489 WP_070202141.1 hypothetical protein -
  WID27_RS02970 (WID27_02970) - 674372..675382 (+) 1011 WP_339151508.1 MsnO8 family LLM class oxidoreductase -
  WID27_RS02975 (WID27_02975) - 675477..676046 (-) 570 WP_208623769.1 CGNR zinc finger domain-containing protein -
  WID27_RS02980 (WID27_02980) - 676103..677326 (+) 1224 WP_339151509.1 MFS transporter -
  WID27_RS02985 (WID27_02985) uvrA 677367..679820 (+) 2454 WP_339151510.1 excinuclease ABC subunit UvrA Machinery gene
  WID27_RS02990 (WID27_02990) - 679880..680626 (-) 747 WP_019766846.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  WID27_RS02995 (WID27_02995) - 680623..682572 (-) 1950 WP_070202136.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  WID27_RS03000 (WID27_03000) - 682574..683242 (-) 669 WP_070202135.1 succinate dehydrogenase cytochrome b subunit -
  WID27_RS03005 (WID27_03005) - 683374..684270 (+) 897 WP_018487422.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 87030.27 Da        Isoelectric Point: 6.5825

>NTDB_id=875218 WID27_RS02985 WP_339151510.1 677367..679820(+) (uvrA) [Streptomyces sp. F41]
MHSPHDPYVRVRGAREHNLQDVNVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGEYPPGAERLDSDAFSPNTAAGACPECHGLGRIHRTDEGL
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDTLGYDVDRPWRELDAKDREWILFTDEQPVVTVHPVREAGRIQRPYQGTY
MSARRYVLHTFADTKSRTLRAKAERFLTSVPCPVCGGSRLRPEAMAVTFGGRTIAELAALPLSDLAEVLAGAHGVAHGGG
AGAEPAGGEETARVLTADLLARIGTVTELGLGYLSLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADT
ESLLGVVDRLKEAGNSVFVVEHHLDVVRRADWLVDVGPLAGEHGGRVLHSGPPEGLAEVPESATRRFLFDRDPAPVREPR
TPTGWIRLTGVERHNVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGVLADRQAGEEATGAGERFCASVTGLEAVDRL
VQVDQKPIGRTPRSNLATYTGLFDTVRKLFAQTGTARERGYTAGRFSFNVRGGRCETCQGEGFVSVELLFLPSTYAPCPD
CHGARYNPETLEVALRGLTIAQVLDLTVESAASFFADTPAAERALTTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQ
RTRRGHTLYLLDEPTTGLHPADVEVLMRQLHGLVDAGSTVVVVEHDMAVVAGADHVIDLGPGGGDRGGRIVAAGAPREVA
RAADSRTAPYLARALGG

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=875218 WID27_RS02985 WP_339151510.1 677367..679820(+) (uvrA) [Streptomyces sp. F41]
ATGCACTCCCCCCACGATCCGTACGTCCGGGTGCGCGGCGCGCGCGAGCACAACCTCCAGGACGTGAACGTCGACATCCC
GCGCGACACCCTGACGGTCTTCACCGGGGTCTCCGGGTCCGGCAAGTCGTCGCTGGCGTTCGGCACGATCTACGCCGAGG
CCCAGCGCCGCTACTTCGAGTCCGTCGCCCCCTACGCCCGCCGGCTCATCCACCAGGTGGGCGCCCCCGCCGTCGGGGAG
ATCACCGGGCTGCCACCCGCCGTATCGCTGGAGCAGCGGCGCTCCGCCCCCGGGGCCCGGTCGTCCGTGGGGACGGTGAC
CACGCTCTCCAACTCGCTGCGGATGCTGTTCTCCCGGGCCGGGGAGTATCCGCCGGGGGCCGAGCGGCTGGACTCCGACG
CCTTCTCCCCCAACACGGCGGCCGGGGCCTGCCCCGAGTGCCACGGGCTCGGACGCATCCACCGTACGGACGAAGGGCTG
CTGGTCCCCGACCCCTCGCTGTCGATCCGGGAGGGGGCGATCGCGGCCTGGCCGGGGGCGTGGCAGGGGAAGAACCTGCG
CGATGTGCTCGACACCCTCGGGTACGACGTCGACCGGCCGTGGCGCGAGCTGGACGCGAAGGACCGGGAGTGGATCCTGT
TCACCGACGAGCAGCCGGTGGTGACGGTGCATCCGGTACGGGAGGCGGGCCGCATCCAACGCCCGTACCAGGGAACGTAC
ATGAGCGCCCGGCGCTATGTGCTGCACACCTTCGCCGATACCAAGAGCCGCACCCTGCGGGCGAAGGCCGAGCGCTTCCT
CACCAGTGTGCCGTGCCCGGTCTGCGGCGGGAGCAGGCTGCGTCCGGAGGCGATGGCGGTGACCTTCGGCGGGCGGACCA
TCGCGGAGCTGGCCGCGCTCCCCCTGTCGGACCTGGCCGAGGTGCTGGCCGGGGCCCACGGCGTGGCGCACGGCGGCGGG
GCGGGGGCGGAGCCGGCGGGCGGGGAGGAGACGGCCCGGGTGCTCACCGCCGATCTGCTGGCCCGGATCGGAACGGTGAC
CGAACTCGGGCTCGGCTATCTGAGCCTGGACCGCACGGCCCCCACCCTCTCCTCCGGCGAGCTGCAACGGCTGCGGCTGG
CCACGCAGTTGCGCTCCGGGCTCTTCGGTGTCGTCTACGTCCTGGACGAGCCGTCGGCCGGGCTGCACCCCGCCGATACG
GAGTCCCTGCTCGGGGTGGTCGACCGGCTCAAGGAGGCCGGGAACTCCGTCTTCGTCGTGGAGCACCACCTCGATGTGGT
GCGGCGGGCGGACTGGCTGGTGGACGTGGGCCCGCTGGCCGGGGAGCACGGTGGGCGGGTGCTGCACAGCGGGCCGCCGG
AGGGGCTGGCCGAGGTGCCGGAGTCCGCGACGCGGCGGTTCCTGTTCGACCGGGACCCCGCGCCGGTACGGGAGCCGCGC
ACGCCCACGGGATGGATCCGGCTCACCGGCGTCGAGCGCCACAACGTACGCGGGGTCGACGCGGCCTTCCCGCTCGGGGT
CTTCACGGCGGTGACCGGGGTGTCGGGCTCGGGCAAGTCGACCCTCGTCGGCCAGGTCCTCGCCGGGGTGCTGGCCGACC
GGCAGGCGGGCGAGGAGGCCACCGGGGCGGGCGAGCGGTTCTGCGCTTCCGTCACCGGGCTGGAGGCGGTGGACCGGCTC
GTCCAGGTGGACCAGAAGCCGATCGGCCGGACGCCCCGGTCCAACCTGGCCACGTACACCGGGCTCTTCGACACCGTACG
GAAGCTGTTCGCGCAGACCGGGACGGCACGTGAACGGGGGTACACGGCGGGGCGGTTCTCGTTCAACGTGCGCGGCGGGC
GGTGCGAGACCTGCCAGGGCGAGGGGTTCGTCTCGGTGGAGCTGCTCTTCCTGCCGAGCACGTACGCCCCCTGCCCGGAC
TGCCATGGCGCCCGCTACAACCCGGAGACCCTGGAGGTCGCCTTGCGCGGGCTGACGATCGCTCAAGTCCTCGACCTGAC
CGTGGAGTCGGCCGCATCGTTCTTCGCCGATACCCCGGCCGCCGAGCGCGCCCTGACCACCCTGCTCGATGTCGGGCTCG
GCTATCTGCGGCTCGGGCAGCCCGCCACCGAGCTGTCCGGCGGCGAGGCGCAGCGGATCAAGCTGGCGTCGGAGCTGCAG
CGCACCCGGCGCGGACACACCCTGTATCTGCTGGACGAGCCCACGACCGGTCTGCATCCGGCCGATGTGGAGGTGCTGAT
GCGGCAGTTGCACGGGCTGGTCGACGCGGGGAGCACGGTGGTGGTCGTGGAGCACGACATGGCCGTGGTCGCGGGCGCGG
ACCATGTGATCGACCTGGGGCCCGGGGGCGGTGACCGGGGCGGGCGGATCGTGGCGGCCGGGGCGCCCCGGGAGGTGGCG
CGTGCGGCGGACAGCCGTACGGCCCCGTATCTGGCGCGTGCGCTGGGCGGTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(498-735)

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.353

84.7

0.367
  uvrA Streptococcus pneumoniae TIGR4

43.353

84.7

0.367
  uvrA Streptococcus pneumoniae D39

43.353

84.7

0.367