Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RFB12_RS03465 Genome accession   NZ_CP133588
Coordinates   626964..627911 (-) Length   315 a.a.
NCBI ID   WP_309218500.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB857     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621964..632911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFB12_RS03440 (RFB12_03440) bioD 622664..623383 (-) 720 WP_309218497.1 dethiobiotin synthase -
  RFB12_RS03445 (RFB12_03445) - 623383..623946 (-) 564 WP_309218498.1 biotin transporter BioY -
  RFB12_RS03450 (RFB12_03450) - 624190..625146 (-) 957 WP_309218499.1 siderophore ABC transporter substrate-binding protein -
  RFB12_RS03455 (RFB12_03455) - 625269..626027 (-) 759 WP_013400053.1 ABC transporter ATP-binding protein -
  RFB12_RS03460 (RFB12_03460) - 626021..626971 (-) 951 WP_062678356.1 iron chelate uptake ABC transporter family permease subunit -
  RFB12_RS03465 (RFB12_03465) ceuB 626964..627911 (-) 948 WP_309218500.1 ABC transporter permease Machinery gene
  RFB12_RS03470 (RFB12_03470) - 628366..628932 (+) 567 WP_309218501.1 FAD-dependent oxidoreductase -
  RFB12_RS03475 (RFB12_03475) - 629297..629517 (-) 221 Protein_673 alcohol dehydrogenase -
  RFB12_RS03480 (RFB12_03480) katA 630031..631497 (+) 1467 WP_309218502.1 catalase KatA -
  RFB12_RS03485 (RFB12_03485) - 631625..631906 (-) 282 WP_062755773.1 hypothetical protein -
  RFB12_RS03490 (RFB12_03490) - 632372..632617 (-) 246 WP_062755769.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34583.88 Da        Isoelectric Point: 9.6176

>NTDB_id=875209 RFB12_RS03465 WP_309218500.1 626964..627911(-) (ceuB) [Parageobacillus toebii strain NEB857]
MKKLFILFVILAVASLFIGVQHISLADLLMLKADDVEVLIISRIPRLISIIIAGASMSICGLIMQQLSQNKFVSPTTAGT
MDCARLGILVSLILFASAGPLLKVTVAFLFAFAGTMIFMRILEKVKYKDAIFIPLVGLMFGNIISSMTTFFAYKYNLIQS
ISSWLHGDFSMIIKGRYELLYLSVPLMIVAYMYANRFTIAGMGEEIATNLGLHYRSIVNVGLIIVAATSSVVVLTVGTLL
FLGLIIPNLVTLYYGDHLEKVLPLTALSGAIFVLACDIFGRVVIYPYEIPIGLTVGVIGSGVFLYLLVRRRKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=875209 RFB12_RS03465 WP_309218500.1 626964..627911(-) (ceuB) [Parageobacillus toebii strain NEB857]
ATGAAAAAGCTGTTTATATTATTCGTCATATTAGCAGTTGCATCTTTATTTATCGGTGTCCAGCATATTTCGCTTGCCGA
TTTGCTGATGTTGAAAGCGGATGACGTAGAAGTATTAATAATCAGCCGGATTCCGCGATTGATCAGCATTATTATTGCGG
GTGCCAGCATGAGTATTTGCGGGCTAATTATGCAGCAGTTAAGCCAAAATAAGTTTGTCTCGCCAACGACGGCGGGGACG
ATGGATTGTGCAAGGTTAGGAATTTTAGTGTCATTGATTTTGTTCGCTTCCGCAGGTCCGCTGCTGAAAGTTACGGTCGC
ATTTTTATTCGCTTTTGCCGGTACGATGATTTTTATGAGAATACTTGAAAAAGTGAAATATAAAGACGCCATTTTTATTC
CGCTTGTCGGTTTAATGTTTGGCAATATCATCAGTTCTATGACAACATTTTTCGCGTATAAGTACAATTTAATCCAATCC
ATTTCGTCATGGCTGCATGGCGATTTTTCCATGATTATAAAAGGGCGGTATGAACTGCTTTACTTAAGTGTTCCGCTTAT
GATTGTCGCTTATATGTATGCGAACCGTTTTACGATAGCAGGAATGGGAGAAGAAATCGCGACAAATTTAGGCCTTCATT
ATCGGTCCATCGTCAATGTCGGATTAATCATCGTGGCTGCTACTTCTTCTGTTGTGGTGCTGACGGTCGGGACACTGCTG
TTTTTAGGATTGATTATTCCAAACCTTGTCACATTATATTATGGAGATCATTTAGAGAAAGTCCTGCCTCTGACGGCATT
GTCAGGAGCAATTTTCGTGTTGGCTTGCGATATTTTCGGGCGCGTTGTTATTTATCCGTATGAAATCCCGATCGGTTTGA
CGGTAGGAGTCATTGGCAGCGGCGTATTTTTGTATTTGTTAGTAAGGAGAAGAAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.662

98.73

0.54