Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RFB14_RS15300 Genome accession   NZ_CP133587
Coordinates   3153595..3155319 (-) Length   574 a.a.
NCBI ID   WP_003387245.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain NEB264     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3148595..3160319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFB14_RS15275 (RFB14_15275) - 3148599..3149177 (-) 579 WP_003387239.1 carbonic anhydrase -
  RFB14_RS15280 (RFB14_15280) - 3149352..3150116 (-) 765 WP_122958420.1 metallophosphoesterase -
  RFB14_RS15285 (RFB14_15285) - 3150271..3150615 (+) 345 WP_311068473.1 hypothetical protein -
  RFB14_RS15290 (RFB14_15290) spo0A 3150983..3151771 (-) 789 WP_024984907.1 sporulation transcription factor Spo0A -
  RFB14_RS15295 (RFB14_15295) spoIVB 3152018..3153349 (-) 1332 WP_003387243.1 SpoIVB peptidase -
  RFB14_RS15300 (RFB14_15300) recN 3153595..3155319 (-) 1725 WP_003387245.1 DNA repair protein RecN Machinery gene
  RFB14_RS15305 (RFB14_15305) ahrC 3155336..3155785 (-) 450 WP_003387250.1 transcriptional regulator AhrC/ArgR -
  RFB14_RS15310 (RFB14_15310) - 3155790..3156647 (-) 858 WP_024984906.1 NAD(+)/NADH kinase -
  RFB14_RS15315 (RFB14_15315) - 3156758..3157570 (-) 813 WP_172920381.1 TlyA family RNA methyltransferase -
  RFB14_RS15320 (RFB14_15320) dxs 3157567..3159453 (-) 1887 WP_024984905.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64903.93 Da        Isoelectric Point: 4.9824

>NTDB_id=875176 RFB14_RS15300 WP_003387245.1 3153595..3155319(-) (recN) [Brevibacillus borstelensis strain NEB264]
MLLELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGRASTDFVRYGETRAEVEGLFELPSGHPAFSVC
ESFGVQVEQDNTLVVRRDISSQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHIHWLDSYGEKEMGSAK
QEYAQLFGLYSKTRQDLERMSKNERELVQRIDLLQYQLNEIEAASLAPGEDEKLLQQRKKWMNIEKVFAGIQDAYRALHG
DQRGSEWLGHAMSELERIVSYDDQLGPILETVQSAYYQVEDAVHQLRQLSDRLDFEPEQLQEVERRLDLIQTLKRKYGKN
VDDILEYAATIQDELDEMHHYDDRLQQLEKRLVELAADLAVEALELSMIRRSCADRLAKEIEQQLRELHMERARFAIDVR
QIPDENGVEIEGAKWRVDANGIDTVEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVQTLIFDEVDTGVSG
RAAQAIAEKLARVALQRQVLCITHLPQVASLADAHFLIQKEMSENETMTLVHSLREEERVTELARMLSGAEVTAKTEEHA
REMITLGRQRKAAK

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=875176 RFB14_RS15300 WP_003387245.1 3153595..3155319(-) (recN) [Brevibacillus borstelensis strain NEB264]
ATGCTGCTGGAGCTTTCCATACGCAATTTTGCGATCATCAAATCCGTAACCATTTCTTTTCAAAAAGGCTTAAACATTTT
GACCGGGGAGACCGGTGCGGGAAAATCGATTATTATTGATGCGCTCGGCCTGCTGCTGGGAGGCCGGGCCTCGACTGATT
TTGTCCGGTACGGGGAAACGCGGGCAGAAGTCGAGGGTCTGTTTGAGCTGCCCAGCGGCCATCCGGCCTTTTCGGTTTGC
GAGAGCTTCGGTGTTCAGGTAGAGCAGGACAACACGCTTGTCGTCAGGCGCGATATTTCCAGTCAGGGAAAAAGCATCAT
CCGCATCAACGGACAGCTTGTCACCCTTGCCATGCTCAGGGAGCTGGGCCCCTGGCTGGTGACCGTCCACGGACAGCATG
ACACTCATATGCTGATGCAGGCGGACAAGCACATACACTGGCTCGATTCCTACGGCGAAAAAGAAATGGGATCGGCCAAA
CAGGAGTATGCACAGTTGTTTGGCCTCTATTCAAAGACGAGACAGGATCTGGAACGGATGTCCAAAAACGAACGGGAGCT
CGTTCAGCGGATCGATCTGCTGCAATACCAGTTAAACGAAATCGAGGCAGCATCCCTGGCGCCCGGAGAGGACGAAAAGC
TGCTTCAGCAGAGAAAGAAATGGATGAACATTGAGAAAGTATTTGCAGGCATCCAGGACGCCTACCGGGCCCTGCACGGC
GACCAGCGCGGAAGCGAGTGGCTTGGACATGCCATGAGCGAGCTGGAACGAATTGTCTCCTATGATGATCAGTTGGGACC
GATACTCGAGACGGTCCAAAGCGCATACTATCAGGTAGAAGATGCAGTGCACCAGCTCAGACAGCTCTCCGACCGGCTCG
ATTTTGAACCGGAGCAGCTTCAGGAAGTAGAGAGAAGGCTGGATTTGATCCAGACGCTGAAGAGAAAATACGGGAAAAAT
GTAGACGATATTCTGGAATATGCGGCAACGATTCAGGATGAATTGGACGAAATGCATCATTACGATGACCGTCTGCAGCA
ACTGGAAAAACGGCTGGTTGAGCTGGCTGCCGATCTCGCCGTCGAGGCACTGGAGCTGTCCATGATCCGCCGCAGCTGTG
CAGACCGGCTTGCCAAGGAAATTGAGCAGCAGCTTCGCGAATTACATATGGAGCGCGCCCGCTTCGCCATCGATGTCCGG
CAAATTCCCGATGAAAACGGGGTGGAAATCGAGGGAGCCAAATGGCGCGTCGATGCCAACGGAATCGATACCGTCGAGTT
TTTAATTTCGCCCAATCCCGGAGAGCCGCTGCGCCCTTTGGCCAAAATCGCTTCCGGCGGTGAGCTGTCGCGGGTCATGC
TGGCGATCAAGACGATTTTGGCCGGTACCGACCAGGTGCAGACCTTGATTTTCGACGAGGTCGATACAGGGGTAAGCGGA
AGGGCTGCCCAAGCCATTGCTGAAAAGCTTGCACGTGTCGCGCTCCAGCGTCAGGTGTTGTGCATTACACACCTTCCGCA
GGTAGCTTCTCTCGCGGATGCCCATTTCCTGATTCAAAAGGAGATGAGCGAGAACGAAACGATGACACTCGTTCACAGCT
TACGCGAGGAGGAGCGGGTCACCGAGCTGGCTCGCATGCTGAGCGGAGCCGAGGTTACAGCAAAAACAGAAGAGCACGCG
CGCGAGATGATCACGCTCGGGCGACAACGAAAAGCTGCCAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.306

100

0.495