Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RE735_RS12890 Genome accession   NZ_CP133585
Coordinates   2401845..2402306 (+) Length   153 a.a.
NCBI ID   WP_309173334.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2400547..2401418 2401845..2402306 flank 427


Gene organization within MGE regions


Location: 2400547..2402306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS12885 (RE735_12885) - 2400547..2401697 (+) 1151 Protein_2529 IS3 family transposase -
  RE735_RS12890 (RE735_12890) kre 2401845..2402306 (+) 462 WP_309173334.1 YkyB family protein Regulator

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17665.28 Da        Isoelectric Point: 10.3379

>NTDB_id=875121 RE735_RS12890 WP_309173334.1 2401845..2402306(+) (kre) [Bacillus aerius strain NEB1378]
MDDYAHTKDIAPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQAYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=875121 RE735_RS12890 WP_309173334.1 2401845..2402306(+) (kre) [Bacillus aerius strain NEB1378]
ATGGACGATTATGCTCATACTAAAGACATAGCACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATCGGAGAT
TACTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAAGCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765