Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RE735_RS12625 Genome accession   NZ_CP133585
Coordinates   2356738..2357016 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus aerius strain NEB1378     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351738..2362016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS12610 (RE735_12610) - 2353729..2354397 (-) 669 WP_008345123.1 TrkA family potassium uptake protein -
  RE735_RS12615 (RE735_12615) - 2354435..2355277 (-) 843 WP_309173298.1 gamma-glutamylcyclotransferase -
  RE735_RS12620 (RE735_12620) - 2355305..2356594 (-) 1290 WP_309173299.1 ATP-binding protein -
  RE735_RS12625 (RE735_12625) abrB 2356738..2357016 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RE735_RS12630 (RE735_12630) mreBH 2357292..2358299 (+) 1008 WP_309173300.1 rod-share determining protein MreBH -
  RE735_RS12635 (RE735_12635) - 2358374..2358505 (+) 132 WP_003210922.1 protein YkpC -
  RE735_RS12640 (RE735_12640) - 2358807..2360039 (+) 1233 WP_309173301.1 aminopeptidase -
  RE735_RS12645 (RE735_12645) - 2360276..2361895 (-) 1620 WP_019743117.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=875119 RE735_RS12625 WP_017359400.1 2356738..2357016(-) (abrB) [Bacillus aerius strain NEB1378]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=875119 RE735_RS12625 WP_017359400.1 2356738..2357016(-) (abrB) [Bacillus aerius strain NEB1378]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GTCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543