Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RE735_RS08740 Genome accession   NZ_CP133585
Coordinates   1620502..1620837 (-) Length   111 a.a.
NCBI ID   WP_309175329.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615502..1625837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS08695 (RE735_08695) comGE 1615901..1616212 (+) 312 WP_309175322.1 competence type IV pilus minor pilin ComGE -
  RE735_RS08700 (RE735_08700) comGF 1616157..1616654 (+) 498 WP_309175323.1 competence type IV pilus minor pilin ComGF -
  RE735_RS08705 (RE735_08705) - 1616651..1617034 (+) 384 WP_309175324.1 competence type IV pilus minor pilin ComGG -
  RE735_RS08710 (RE735_08710) - 1617095..1617289 (+) 195 WP_268360764.1 YqzE family protein -
  RE735_RS08715 (RE735_08715) - 1617554..1617788 (+) 235 Protein_1695 transposase -
  RE735_RS08720 (RE735_08720) - 1617846..1618172 (-) 327 WP_309175325.1 DUF3889 domain-containing protein -
  RE735_RS08725 (RE735_08725) tapA 1618425..1618952 (+) 528 WP_309175326.1 amyloid fiber anchoring/assembly protein TapA -
  RE735_RS08730 (RE735_08730) sipW 1619003..1619575 (+) 573 WP_309175327.1 signal peptidase I SipW -
  RE735_RS08735 (RE735_08735) tasA 1619634..1620434 (+) 801 WP_309175328.1 biofilm matrix protein TasA -
  RE735_RS08740 (RE735_08740) sinR 1620502..1620837 (-) 336 WP_309175329.1 transcriptional regulator SinR Regulator
  RE735_RS08745 (RE735_08745) - 1620871..1621035 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  RE735_RS08750 (RE735_08750) - 1621220..1622017 (-) 798 WP_309175330.1 YqhG family protein -
  RE735_RS08755 (RE735_08755) - 1622032..1623702 (-) 1671 WP_309175331.1 SNF2-related protein -
  RE735_RS08760 (RE735_08760) gcvT 1624263..1625360 (+) 1098 WP_309175332.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12920.52 Da        Isoelectric Point: 4.9758

>NTDB_id=875110 RE735_RS08740 WP_309175329.1 1620502..1620837(-) (sinR) [Bacillus aerius strain NEB1378]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKISAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQVEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=875110 RE735_RS08740 WP_309175329.1 1620502..1620837(-) (sinR) [Bacillus aerius strain NEB1378]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAATCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGTAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

91.892

100

0.919