Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RE735_RS08400 Genome accession   NZ_CP133585
Coordinates   1562883..1563653 (+) Length   256 a.a.
NCBI ID   WP_309175283.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1557883..1568653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS08370 (RE735_08370) - 1558189..1560303 (+) 2115 WP_373467215.1 HD family phosphohydrolase -
  RE735_RS08375 (RE735_08375) ybeY 1560304..1560783 (+) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  RE735_RS08380 (RE735_08380) - 1560761..1561147 (+) 387 WP_309175480.1 diacylglycerol kinase family protein -
  RE735_RS08385 (RE735_08385) - 1561260..1561658 (+) 399 WP_008342410.1 cytidine deaminase -
  RE735_RS08390 (RE735_08390) era 1561651..1562556 (+) 906 WP_007501305.1 GTPase Era -
  RE735_RS08395 (RE735_08395) - 1562704..1562847 (+) 144 WP_309175282.1 YqzL family protein -
  RE735_RS08400 (RE735_08400) recO 1562883..1563653 (+) 771 WP_309175283.1 DNA repair protein RecO Machinery gene
  RE735_RS08405 (RE735_08405) glyQ 1563983..1564870 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  RE735_RS08410 (RE735_08410) glyS 1564863..1566908 (+) 2046 WP_309175284.1 glycine--tRNA ligase subunit beta -
  RE735_RS08415 (RE735_08415) - 1567075..1567713 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  RE735_RS08420 (RE735_08420) - 1567739..1568560 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29349.03 Da        Isoelectric Point: 8.4348

>NTDB_id=875107 RE735_RS08400 WP_309175283.1 1562883..1563653(+) (recO) [Bacillus aerius strain NEB1378]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEIKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSSAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=875107 RE735_RS08400 WP_309175283.1 1562883..1563653(+) (recO) [Bacillus aerius strain NEB1378]
ATGCTCATTAAAAGTGAAGGAATTGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCATTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTCGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGATCAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CTCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATCTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754