Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RE735_RS04700 Genome accession   NZ_CP133585
Coordinates   918436..919077 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 913436..924077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS04675 (RE735_04675) - 913824..914177 (-) 354 WP_019744042.1 hypothetical protein -
  RE735_RS04680 (RE735_04680) degQ 914683..914823 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  RE735_RS04685 (RE735_04685) - 914976..915899 (+) 924 WP_309174757.1 polyprenyl synthetase family protein -
  RE735_RS04690 (RE735_04690) comX 915877..916050 (+) 174 WP_309174758.1 competence pheromone ComX -
  RE735_RS04695 (RE735_04695) comP 916064..918355 (+) 2292 WP_309174759.1 ATP-binding protein Regulator
  RE735_RS04700 (RE735_04700) comA 918436..919077 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  RE735_RS04705 (RE735_04705) - 919101..919490 (+) 390 WP_309174760.1 hotdog fold thioesterase -
  RE735_RS04710 (RE735_04710) mnhG 919581..919955 (-) 375 WP_035701201.1 monovalent cation/H(+) antiporter subunit G -
  RE735_RS04715 (RE735_04715) - 919939..920220 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  RE735_RS04720 (RE735_04720) - 920220..920699 (-) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  RE735_RS04725 (RE735_04725) - 920706..922184 (-) 1479 WP_309174761.1 Na+/H+ antiporter subunit D -
  RE735_RS04730 (RE735_04730) - 922177..922518 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  RE735_RS04735 (RE735_04735) - 922518..922949 (-) 432 WP_309174762.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=875098 RE735_RS04700 WP_007500477.1 918436..919077(+) (comA) [Bacillus aerius strain NEB1378]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=875098 RE735_RS04700 WP_007500477.1 918436..919077(+) (comA) [Bacillus aerius strain NEB1378]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCAGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAAAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718