Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RE735_RS00245 Genome accession   NZ_CP133585
Coordinates   47307..47597 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42307..52597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS00230 (RE735_00230) - 42492..43694 (-) 1203 WP_309174123.1 ubiquitin-like domain-containing protein -
  RE735_RS00235 (RE735_00235) - 43939..44706 (-) 768 WP_309174124.1 TatD family hydrolase -
  RE735_RS00240 (RE735_00240) metG 44788..46788 (-) 2001 WP_309174125.1 methionine--tRNA ligase -
  RE735_RS00245 (RE735_00245) abrB 47307..47597 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RE735_RS00250 (RE735_00250) rsmI 47642..48523 (-) 882 WP_309174126.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RE735_RS00255 (RE735_00255) - 48498..48797 (-) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  RE735_RS00260 (RE735_00260) - 48784..49527 (-) 744 WP_309174127.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RE735_RS00265 (RE735_00265) yabA 49583..49936 (-) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  RE735_RS00270 (RE735_00270) - 49951..50778 (-) 828 WP_309174128.1 stage 0 sporulation family protein -
  RE735_RS00275 (RE735_00275) holB 50781..51770 (-) 990 WP_309174129.1 DNA polymerase III subunit delta' -
  RE735_RS00280 (RE735_00280) - 51782..52222 (-) 441 WP_035391564.1 YaaR family protein -
  RE735_RS00285 (RE735_00285) - 52235..52564 (-) 330 WP_309174131.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=875082 RE735_RS00245 WP_087975202.1 47307..47597(+) (abrB) [Bacillus aerius strain NEB1378]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=875082 RE735_RS00245 WP_087975202.1 47307..47597(+) (abrB) [Bacillus aerius strain NEB1378]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
ATTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938