Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RDV90_RS13930 Genome accession   NZ_CP133578
Coordinates   2947623..2948249 (-) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain FACU     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2942623..2953249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV90_RS13915 helD 2942860..2944914 (-) 2055 WP_047071934.1 DNA helicase IV -
  RDV90_RS13920 - 2945038..2945484 (+) 447 WP_008499924.1 YccF domain-containing protein -
  RDV90_RS13925 yccS 2945504..2947666 (+) 2163 WP_039025219.1 YccS family putative transporter -
  RDV90_RS13930 sxy/tfoX 2947623..2948249 (-) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  RDV90_RS13935 sulA 2948467..2948976 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  RDV90_RS13940 ompA 2949331..2950386 (+) 1056 WP_008499928.1 porin OmpA -
  RDV90_RS13945 matP 2950451..2950903 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  RDV90_RS13950 - 2951090..2952850 (+) 1761 WP_023343697.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=875039 RDV90_RS13930 WP_008499926.1 2947623..2948249(-) (sxy/tfoX) [Enterobacter roggenkampii strain FACU]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=875039 RDV90_RS13930 WP_008499926.1 2947623..2948249(-) (sxy/tfoX) [Enterobacter roggenkampii strain FACU]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTTTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGTTGGAAGGAGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567