Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RDV79_RS12735 Genome accession   NZ_CP133573
Coordinates   2799923..2801362 (-) Length   479 a.a.
NCBI ID   WP_017784940.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain 202108B1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2794923..2806362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV79_RS12705 (RDV79_12705) dagF 2795198..2795938 (+) 741 WP_201889598.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  RDV79_RS12710 (RDV79_12710) - 2796043..2797947 (+) 1905 WP_201889597.1 transcription antiterminator -
  RDV79_RS12715 (RDV79_12715) npr 2797963..2798235 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  RDV79_RS12720 (RDV79_12720) rapZ 2798256..2799122 (-) 867 WP_005305946.1 RNase adapter RapZ -
  RDV79_RS12725 (RDV79_12725) ptsN 2799165..2799611 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RDV79_RS12730 (RDV79_12730) hpf 2799614..2799901 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  RDV79_RS12735 (RDV79_12735) rpoN/rpoN1 2799923..2801362 (-) 1440 WP_017784940.1 RNA polymerase factor sigma-54 Machinery gene
  RDV79_RS12740 (RDV79_12740) lptB 2801428..2802153 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  RDV79_RS12745 (RDV79_12745) lptA 2802157..2802684 (-) 528 WP_099359776.1 lipopolysaccharide transport periplasmic protein LptA -
  RDV79_RS12750 (RDV79_12750) lptC 2802671..2803231 (-) 561 WP_010635927.1 LPS export ABC transporter periplasmic protein LptC -
  RDV79_RS12755 (RDV79_12755) kdsC 2803228..2803782 (-) 555 WP_201889596.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  RDV79_RS12760 (RDV79_12760) - 2803782..2804777 (-) 996 WP_139397670.1 KpsF/GutQ family sugar-phosphate isomerase -
  RDV79_RS12765 (RDV79_12765) mlaF 2804985..2805785 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53876.83 Da        Isoelectric Point: 4.3584

>NTDB_id=875014 RDV79_RS12735 WP_017784940.1 2799923..2801362(-) (rpoN/rpoN1) [Aeromonas dhakensis strain 202108B1]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLRENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=875014 RDV79_RS12735 WP_017784940.1 2799923..2801362(-) (rpoN/rpoN1) [Aeromonas dhakensis strain 202108B1]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCTATCGACGAATCCGGTTATCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAGAGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCGGCCCCGCGCATCCGGGTCAACGAAACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAATTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAACCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486