Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RDV79_RS12465 Genome accession   NZ_CP133573
Coordinates   2749552..2750793 (+) Length   413 a.a.
NCBI ID   WP_201879871.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain 202108B1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2744552..2755793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV79_RS12440 (RDV79_12440) ampD 2744951..2745523 (-) 573 WP_201879874.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RDV79_RS12445 (RDV79_12445) - 2745647..2746117 (+) 471 WP_043171614.1 TIGR02281 family clan AA aspartic protease -
  RDV79_RS12450 (RDV79_12450) nadC 2746122..2746979 (+) 858 WP_043171615.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RDV79_RS12455 (RDV79_12455) tapA 2747301..2747723 (+) 423 WP_043171616.1 type IVa pilus major pilin TapA -
  RDV79_RS12460 (RDV79_12460) pilB 2747730..2749436 (+) 1707 WP_042049838.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  RDV79_RS12465 (RDV79_12465) pilC 2749552..2750793 (+) 1242 WP_201879871.1 type II secretion system F family protein Machinery gene
  RDV79_RS12470 (RDV79_12470) pilD 2750816..2751688 (+) 873 WP_201879868.1 A24 family peptidase Machinery gene
  RDV79_RS12475 (RDV79_12475) coaE 2751708..2752322 (+) 615 WP_201879854.1 dephospho-CoA kinase -
  RDV79_RS12480 (RDV79_12480) zapD 2752360..2753082 (+) 723 WP_026141001.1 cell division protein ZapD -
  RDV79_RS12485 (RDV79_12485) yacG 2753092..2753286 (+) 195 WP_201879851.1 DNA gyrase inhibitor YacG -
  RDV79_RS12490 (RDV79_12490) mutT 2753347..2753760 (-) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  RDV79_RS12495 (RDV79_12495) - 2753769..2754947 (-) 1179 WP_201883625.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45470.60 Da        Isoelectric Point: 9.8734

>NTDB_id=875012 RDV79_RS12465 WP_201879871.1 2749552..2750793(+) (pilC) [Aeromonas dhakensis strain 202108B1]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRTWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=875012 RDV79_RS12465 WP_201879871.1 2749552..2750793(+) (pilC) [Aeromonas dhakensis strain 202108B1]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGTTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGTGGCGCCAAGATAAAGCCGATGGATATTGCCGTCGTCTCCCGT
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
CGCCATTGTCGTCACCTCCATTCTGTTGCTGTTTGTCATTCCGCAGTTTGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTTGCCATCTTCCTCTACGTGCGAACCTGGCGCGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCGATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACTGTTGATCTGTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

47.355

96.126

0.455
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368