Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WHL52_RS13985 Genome accession   NZ_CP149576
Coordinates   2654434..2655561 (+) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis strain DSM 10     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2649434..2660561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS13955 - 2650010..2650188 (-) 179 Protein_2702 hypothetical protein -
  WHL52_RS13960 arsC 2650543..2650962 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  WHL52_RS13965 acr3 2650974..2652014 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  WHL52_RS13970 yqcK 2652037..2652477 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  WHL52_RS13975 arsR 2652538..2652855 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  WHL52_RS13980 yqcI 2653227..2653991 (-) 765 WP_004398670.1 YqcI/YcgG family protein -
  WHL52_RS13985 rapC 2654434..2655561 (+) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  WHL52_RS13990 phrE 2655551..2655685 (+) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  WHL52_RS13995 - 2655795..2655953 (+) 159 WP_003245945.1 hypothetical protein -
  WHL52_RS14000 yqcG 2656323..2657918 (+) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  WHL52_RS14005 yqcF 2657933..2658511 (+) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  WHL52_RS14010 - 2658629..2658775 (+) 147 WP_009967791.1 hypothetical protein -
  WHL52_RS14015 - 2658772..2659134 (-) 363 WP_003229947.1 hypothetical protein -
  WHL52_RS14020 - 2659150..2659629 (-) 480 WP_004399085.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=874985 WHL52_RS13985 WP_004398842.1 2654434..2655561(+) (rapC) [Bacillus subtilis strain DSM 10]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=874985 WHL52_RS13985 WP_004398842.1 2654434..2655561(+) (rapC) [Bacillus subtilis strain DSM 10]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384