Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WHL52_RS08235 Genome accession   NZ_CP149576
Coordinates   1568017..1568466 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain DSM 10     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563017..1573466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS08195 ctaE 1563034..1563657 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WHL52_RS08200 ctaF 1563660..1563992 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WHL52_RS08205 ctaG 1564019..1564912 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WHL52_RS08210 ylbA 1564944..1565306 (-) 363 WP_003232238.1 YugN family protein -
  WHL52_RS08215 ylbB 1565446..1565892 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WHL52_RS08220 ylbC 1565976..1567016 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WHL52_RS08225 ylbD 1567248..1567646 (+) 399 WP_003232233.1 YlbD family protein -
  WHL52_RS08230 ylbE 1567662..1567901 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHL52_RS08235 ylbF 1568017..1568466 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHL52_RS08240 ylbG 1568521..1568793 (+) 273 WP_009967171.1 YlbG family protein -
  WHL52_RS08245 rsmD 1569116..1569670 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHL52_RS08250 coaD 1569675..1570160 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHL52_RS08255 spoVV 1570171..1571397 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHL52_RS08260 ylbK 1571578..1572360 (+) 783 WP_003232221.1 patatin family protein -
  WHL52_RS08265 sepM 1572362..1573387 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=874944 WHL52_RS08235 WP_003221370.1 1568017..1568466(+) (ylbF) [Bacillus subtilis strain DSM 10]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=874944 WHL52_RS08235 WP_003221370.1 1568017..1568466(+) (ylbF) [Bacillus subtilis strain DSM 10]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1