Detailed information NTG0874945

Bioinformatically predicted

Overview

• Name: sepM
• Type: Regulator
• Locus tag: WHL52_RS08265
• Genome accession: NZ_CP149576
• Coordinates: 1572362..1573387 (+)
• Length: 341 a.a.
• NCBI ID: WP_003245451.1
• Uniprot ID: O34470
• Organism: Bacillus subtilis strain DSM 10
• Function: processing of CSP (predicted from homology) Competence regulation

Genomic Context

Location: 1567362..1578387

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHL52_RS08230	ylbE	1567662..1567901 (+)	240	WP_003232231.1	YlbE-like family protein	-
WHL52_RS08235	ylbF	1568017..1568466 (+)	450	WP_003221370.1	regulatory iron-sulfur-containing complex subunit RicF	Regulator
WHL52_RS08240	ylbG	1568521..1568793 (+)	273	WP_009967171.1	YlbG family protein	-
WHL52_RS08245	rsmD	1569116..1569670 (+)	555	WP_003232227.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
WHL52_RS08250	coaD	1569675..1570160 (+)	486	WP_003245283.1	pantetheine-phosphate adenylyltransferase	-
WHL52_RS08255	spoVV	1570171..1571397 (-)	1227	WP_003245492.1	dipicolinic acid transporter SpoVV	-
WHL52_RS08260	ylbK	1571578..1572360 (+)	783	WP_003232221.1	patatin family protein	-
WHL52_RS08265	sepM	1572362..1573387 (+)	1026	WP_003245451.1	protease DdcP	Regulator
WHL52_RS08270	ylbM	1573404..1574651 (-)	1248	WP_003244707.1	nucleotidyltransferase	-
WHL52_RS08275	-	1574648..1574833 (-)	186	WP_003232215.1	hypothetical protein	-
WHL52_RS08280	ylbN	1574861..1575379 (+)	519	WP_003232214.1	DUF177 domain-containing protein	-
WHL52_RS08285	rpmF	1575401..1575580 (+)	180	WP_003154457.1	50S ribosomal protein L32	-
WHL52_RS08290	gerR	1575726..1576307 (+)	582	WP_003232210.1	sporulation specific transcriptional regulator GerR	-
WHL52_RS08295	ylbP	1576364..1576846 (-)	483	WP_003244940.1	N-acetyltransferase	-
WHL52_RS08300	-	1577006..1577902 (+)	897	WP_003232206.1	2-dehydropantoate 2-reductase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37651.23 Da
• Isoelectric Point: 6.5347

>NTDB_id=874945 WHL52_RS08265 WP_003245451.1 1572362..1573387(+) (sepM) [Bacillus subtilis strain DSM 10]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide

• Length: 1026 bp

>NTDB_id=874945 WHL52_RS08265 WP_003245451.1 1572362..1573387(+) (sepM) [Bacillus subtilis strain DSM 10]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (232-331)

• Peptidase family M50 (Peptidase_M50) (59-220)

• PDZ domain (PDZ_2) (128-195)

3D structure

• PDB: 2KJP

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sepM	Streptococcus mutans UA159	39.143	100	0.402