Detailed information NTG0874945

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: RDV84_RS12395
• Genome accession: NZ_CP133568
• Coordinates: 2922841..2924109 (-)
• Length: 422 a.a.
• NCBI ID: WP_078998160.1
• Uniprot ID: -
• Organism: Lysobacter yananisis strain SNNU513
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2917841..2929109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV84_RS12380 (RDV84_12380)	-	2920179..2921096 (+)	918	WP_309153565.1	Nudix family hydrolase	-
RDV84_RS12385 (RDV84_12385)	coaE	2921315..2921929 (-)	615	WP_309153566.1	dephospho-CoA kinase	-
RDV84_RS12390 (RDV84_12390)	-	2921934..2922821 (-)	888	WP_057948799.1	A24 family peptidase	-
RDV84_RS12395 (RDV84_12395)	pilC	2922841..2924109 (-)	1269	WP_078998160.1	type II secretion system F family protein	Machinery gene
RDV84_RS12400 (RDV84_12400)	pilB	2924113..2925840 (-)	1728	WP_078998159.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RDV84_RS12405 (RDV84_12405)	-	2925918..2927624 (-)	1707	WP_309153567.1	phosphoethanolamine transferase	-
RDV84_RS12410 (RDV84_12410)	-	2927683..2928123 (-)	441	WP_078998157.1	pilin	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 45992.46 Da
• Isoelectric Point: 10.3218

>NTDB_id=874945 RDV84_RS12395 WP_078998160.1 2922841..2924109(-) (pilC) [Lysobacter yananisis strain SNNU513]
MSATRSATRAASKTAPQVRRENPLALFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKAKPLFGASGKRI
TATDIAIFSRQIATMLKSGVPIVTSLEIIGEGHKNPRMKTLLNAVRSDLESGLSLYEAMSRHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALYYPATVIAVAILVSAILLVFVVPQFKATFQSFGADLPAFTLMVIGMSEFMIQ
WWWAVLLLVVGAGVAFVMAKNRSLAFSHFIDRMMLKLPIVGQILHNAAIARFARTLAVSFRAGVPLVEALDTVAGATGNV
VYEKAVLRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVIAMYLPIFKLAATI

Nucleotide

• Length: 1269 bp

>NTDB_id=874945 RDV84_RS12395 WP_078998160.1 2922841..2924109(-) (pilC) [Lysobacter yananisis strain SNNU513]
ATGTCCGCGACCCGTTCCGCCACTCGCGCCGCCAGCAAGACCGCCCCCCAGGTCCGCCGCGAAAATCCCCTGGCCCTGTT
CGTCTGGCAGGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCG
AGCTGCGCCGCCAGGGCATCACCCCGACCGTGGTCAAGCCCAAGGCCAAGCCGCTGTTCGGCGCCTCCGGCAAGCGCATC
ACCGCGACCGACATCGCCATCTTCAGCCGCCAGATCGCAACCATGCTGAAGTCCGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGACCCTGCTCAACGCGGTGCGCTCCGATCTGGAAAGCGGCTTGT
CGCTGTACGAGGCGATGTCCCGGCATCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCG
GGCGTGCTCGAAACCGTGCTGGACACGGTGGCCACGTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGC
CTTGTACTACCCGGCCACGGTCATCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGGTGTTCGTGGTGCCGCAGTTCA
AGGCGACGTTCCAGAGCTTCGGCGCGGATCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGAATTCATGATCCAG
TGGTGGTGGGCCGTCCTGCTGCTGGTGGTCGGCGCCGGCGTCGCCTTCGTCATGGCCAAGAACCGCTCGCTGGCGTTCTC
CCACTTCATCGACCGGATGATGCTCAAGCTGCCGATCGTGGGCCAGATCCTGCACAACGCGGCCATCGCCCGCTTCGCCC
GCACCCTGGCCGTCAGCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTCGACACCGTCGCCGGCGCGACCGGCAACGTC
GTCTACGAGAAGGCCGTGCTGCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAACAGGTCAA
CCTGTTCCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCG
CGGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCGCTGTCGAGCCTGCTCGAACCGCTGATCATGATCATCCTG
GGCGTCATCGTCGGCGGCATGGTCATCGCGATGTATCTGCCGATCTTCAAGCTGGCCGCCACGATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (292-414)

• Type II secretion system (T2SS), protein F (T2SSF) (88-211)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	55.693	95.735	0.533
pilC	Pseudomonas stutzeri DSM 10701	54.523	94.313	0.514
pilC	Acinetobacter baylyi ADP1	52.709	96.209	0.507
pilC	Acinetobacter baumannii D1279779	51.478	96.209	0.495
pilG	Neisseria gonorrhoeae MS11	43.25	94.787	0.41
pilG	Neisseria meningitidis 44/76-A	43.25	94.787	0.41
pilC	Vibrio campbellii strain DS40M4	41.667	96.682	0.403
pilC	Vibrio cholerae strain A1552	40.796	95.261	0.389
pilC	Thermus thermophilus HB27	36.085	100	0.363