Detailed information NTG0874934

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: WHL52_RS06855
• Genome accession: NZ_CP149576
• Coordinates: 1315463..1316599 (+)
• Length: 378 a.a.
• NCBI ID: WP_010886491.1
• Uniprot ID: Q00828
• Organism: Bacillus subtilis strain DSM 10
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1310463..1321599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHL52_RS06835	uxaA	1310913..1312406 (+)	1494	WP_003245409.1	UxaA family hydrolase	-
WHL52_RS06840	yjnA	1312445..1313209 (-)	765	WP_003245643.1	sulfite exporter TauE/SafE family protein	-
WHL52_RS06845	yjoA	1313434..1313898 (-)	465	WP_003245144.1	DinB family protein	-
WHL52_RS06850	yjoB	1314047..1315318 (+)	1272	WP_003245490.1	ATPase YjoB	-
WHL52_RS06855	rapC	1315463..1316599 (+)	1137	WP_010886491.1	response regulator aspartate phosphatase RapA	Regulator
WHL52_RS06860	phrA	1316589..1316723 (+)	135	WP_003245487.1	phosphatase RapA inhibitor PhrA	-
WHL52_RS06865	yjpA	1316754..1317011 (-)	258	WP_003232731.1	YciI family protein	-
WHL52_RS06870	xlyB	1317132..1318085 (+)	954	WP_003244876.1	N-acetylmuramoyl-L-alanine amidase	-
WHL52_RS06875	yjqA	1318125..1318502 (-)	378	WP_003245254.1	PH domain-containing protein	-
WHL52_RS06880	pghB	1318608..1319210 (+)	603	WP_003244789.1	poly-gamma-glutamate hydrolase family protein	-
WHL52_RS06885	xpdC	1319287..1320123 (+)	837	WP_003245071.1	manganese catalase family protein	-
WHL52_RS06890	xkdA	1320167..1320763 (-)	597	WP_003232721.1	ImmA/IrrE family metallo-endopeptidase	-
WHL52_RS06895	xre	1320926..1321267 (-)	342	WP_003232719.1	HTH-type transcriptional regulator Xre	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44974.16 Da
• Isoelectric Point: 4.7611

>NTDB_id=874934 WHL52_RS06855 WP_010886491.1 1315463..1316599(+) (rapC) [Bacillus subtilis strain DSM 10]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=874934 WHL52_RS06855 WP_010886491.1 1315463..1316599(+) (rapC) [Bacillus subtilis strain DSM 10]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (221-293)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-67)

3D structure

• AlphaFold DB: Q00828

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.681	99.471	0.444
rapF	Bacillus subtilis subsp. subtilis str. 168	41.689	100	0.418