Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q5M43_RS10100 Genome accession   NZ_CP133562
Coordinates   2161967..2162593 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. xiangfangensis strain HD2769     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2156967..2167593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5M43_RS10080 (Q5M43_10080) - 2157366..2159126 (-) 1761 WP_017384808.1 AAA family ATPase -
  Q5M43_RS10085 (Q5M43_10085) matP 2159313..2159765 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  Q5M43_RS10090 (Q5M43_10090) ompA 2159831..2160883 (-) 1053 WP_108376575.1 porin OmpA -
  Q5M43_RS10095 (Q5M43_10095) sulA 2161240..2161749 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  Q5M43_RS10100 (Q5M43_10100) sxy/tfoX 2161967..2162593 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  Q5M43_RS10105 (Q5M43_10105) yccS 2162550..2164712 (-) 2163 WP_265187889.1 YccS family putative transporter -
  Q5M43_RS10110 (Q5M43_10110) - 2164731..2165177 (-) 447 WP_003858149.1 YccF domain-containing protein -
  Q5M43_RS10115 (Q5M43_10115) helD 2165300..2167354 (+) 2055 WP_033487272.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=874904 Q5M43_RS10100 WP_017384804.1 2161967..2162593(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain HD2769]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=874904 Q5M43_RS10100 WP_017384804.1 2161967..2162593(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain HD2769]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGTGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572