Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   WHL52_RS00330 Genome accession   NZ_CP149576
Coordinates   59721..59951 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain DSM 10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54721..64951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS00300 ridA 54886..55263 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  WHL52_RS00305 spoVG 55457..55750 (+) 294 WP_003218346.1 septation regulator SpoVG -
  WHL52_RS00310 glmU 55943..57313 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  WHL52_RS00315 prs 57336..58289 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  WHL52_RS00320 ctc 58374..58988 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  WHL52_RS00325 pth 59095..59661 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  WHL52_RS00330 subA/fin 59721..59951 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  WHL52_RS00335 mfd 60021..63554 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  WHL52_RS00340 spoVT 63690..64226 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=874881 WHL52_RS00330 WP_003243417.1 59721..59951(+) (subA/fin) [Bacillus subtilis strain DSM 10]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=874881 WHL52_RS00330 WP_003243417.1 59721..59951(+) (subA/fin) [Bacillus subtilis strain DSM 10]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1