Detailed information NTG0874867

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: RE438_RS26365
• Genome accession: NZ_CP133557
• Coordinates: 5045378..5046727 (-)
• Length: 449 a.a.
• NCBI ID: WP_048563437.1
• Uniprot ID: -
• Organism: Bacillus wiedmannii strain EPS29
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5040378..5051727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RE438_RS26345 (RE438_26320)	secA	5040705..5043212 (-)	2508	WP_000579393.1	preprotein translocase subunit SecA	-
RE438_RS26350 (RE438_26325)	hpf	5043487..5044029 (-)	543	WP_000671193.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
RE438_RS26355 (RE438_26330)	cspC	5044350..5044547 (-)	198	WP_001990088.1	cold shock protein CspC	-
RE438_RS26360 (RE438_26335)	-	5044674..5045378 (-)	705	WP_048563438.1	ComF family protein	-
RE438_RS26365 (RE438_26340)	comFA	5045378..5046727 (-)	1350	WP_048563437.1	ATP-dependent helicase ComFA	Machinery gene
RE438_RS26370 (RE438_26345)	-	5046855..5048141 (-)	1287	WP_048563436.1	NlpC/P60 family protein	-
RE438_RS26375 (RE438_26350)	-	5048394..5048708 (-)	315	WP_000400858.1	helix-turn-helix domain-containing protein	-
RE438_RS26380 (RE438_26355)	-	5048881..5049723 (-)	843	WP_048563435.1	DegV family protein	-
RE438_RS26385 (RE438_26360)	-	5049963..5050598 (+)	636	WP_048563434.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51214.00 Da
• Isoelectric Point: 9.7618

>NTDB_id=874867 RE438_RS26365 WP_048563437.1 5045378..5046727(-) (comFA) [Bacillus wiedmannii strain EPS29]
MLAGKQLLLEELSSDLRDTLQDLKKKREVVCVQGVIKKASKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKGEKGLNSLQWNGTLSTGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGMEEALRKGERVCIAT
PRTDVVLELAPRLQKVFPNVNVASLYGGSEDRDKDAALVIATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPIPLFCWCGNWKKILHHKRIPRVLLQWLEMYVNKKHPIFL
FVPHVRYIEELSLILKTLDSRIDGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHCGKTEAMVRAKRHIQSMNKKAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=874867 RE438_RS26365 WP_048563437.1 5045378..5046727(-) (comFA) [Bacillus wiedmannii strain EPS29]
ATGTTAGCAGGGAAACAGTTACTATTAGAGGAACTCTCTTCAGATTTACGGGATACATTACAAGATTTGAAAAAGAAGAG
GGAGGTCGTATGTGTACAAGGTGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCGTCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGTGGGATCGCTGAAAGAAAAGGAGAAAAAGGTTTAAATTCTTTACAGTGGAACGGGACTTT
GTCTACTGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCGTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAGACAGAAATGTTATTTTACGGTATGGAAGAGGCATTGCGAAAAGGAGAAAGGGTTTGTATTGCAACG
CCCAGAACAGATGTTGTACTGGAATTAGCTCCGAGATTACAAAAAGTGTTTCCAAATGTAAATGTAGCTTCCTTATACGG
AGGAAGTGAAGATAGGGACAAAGATGCAGCGTTAGTCATTGCAACTACGCATCAACTGTTACGTTACTATAGAGCGTTTC
ATGTCATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAAAGCGGCGCGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAATTTTAGAAGAGGGAAACAAAA
GGGCATCATTGTTTCTGGGCGATACCATCGTCATCCGTTACCAATTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
TCCTTCATCATAAAAGAATTCCTCGAGTGTTACTACAATGGTTAGAAATGTACGTAAACAAAAAACATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAATTGAGCCTGATATTGAAAACGTTGGATTCTAGAATCGATGGTGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTAGCAGCTTTCAGAAAGGGAGAAATTCCGTTATTAGTTACAACGACAATTTTAG
AGAGAGGAGTCACTGTGAAGAATTTACAAGTTGCGGTGTTAGGGGCGGAAGAAGAAATCTTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTATGGTGAGGTCGTTTATTTTCATTGCGGTAAGACAGAGGC
GATGGTACGCGCGAAAAGGCATATTCAAAGTATGAACAAAAAGGCGAAAGAACAAGGATTAATCGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (107-254)

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.226	98.441	0.494
comFA	Latilactobacillus sakei subsp. sakei 23K	41.206	88.641	0.365