Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RE438_RS21930 Genome accession   NZ_CP133557
Coordinates   4224991..4225737 (-) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain EPS29     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4219991..4230737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS21915 (RE438_21890) dnaG 4220761..4222557 (-) 1797 WP_048562283.1 DNA primase -
  RE438_RS21920 (RE438_21895) - 4223409..4224221 (-) 813 WP_000368940.1 pyruvate, water dikinase regulatory protein -
  RE438_RS21925 (RE438_21900) - 4224251..4224883 (-) 633 WP_000583755.1 helix-turn-helix transcriptional regulator -
  RE438_RS21930 (RE438_21905) recO 4224991..4225737 (-) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  RE438_RS21935 (RE438_21910) - 4225771..4225914 (-) 144 WP_000883924.1 YqzL family protein -
  RE438_RS21940 (RE438_21915) era 4226091..4226996 (-) 906 WP_001080239.1 GTPase Era -
  RE438_RS21945 (RE438_21920) - 4226989..4227387 (-) 399 WP_048562282.1 cytidine deaminase -
  RE438_RS21950 (RE438_21925) - 4227487..4227840 (-) 354 WP_048562281.1 diacylglycerol kinase family protein -
  RE438_RS21955 (RE438_21930) ybeY 4227837..4228307 (-) 471 WP_000054689.1 rRNA maturation RNase YbeY -
  RE438_RS21960 (RE438_21935) - 4228304..4230448 (-) 2145 WP_048562280.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=874857 RE438_RS21930 WP_000487012.1 4224991..4225737(-) (recO) [Bacillus wiedmannii strain EPS29]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=874857 RE438_RS21930 WP_000487012.1 4224991..4225737(-) (recO) [Bacillus wiedmannii strain EPS29]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CCCATGGTAATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGGCTTGGCAATGTATCGGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAGTCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548