Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RE438_RS20385 Genome accession   NZ_CP133557
Coordinates   3955995..3956453 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain EPS29     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3950995..3961453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS20370 (RE438_20345) - 3951652..3951888 (+) 237 WP_048563234.1 hypothetical protein -
  RE438_RS20375 (RE438_20350) - 3952063..3954171 (-) 2109 WP_048563235.1 polyphosphate kinase -
  RE438_RS20380 (RE438_20355) ppx 3954279..3955817 (-) 1539 WP_048563236.1 exopolyphosphatase -
  RE438_RS20385 (RE438_20360) kre 3955995..3956453 (+) 459 WP_000804864.1 YkyB family protein Regulator
  RE438_RS20390 (RE438_20365) - 3956485..3957147 (-) 663 WP_048563237.1 YkyA family protein -
  RE438_RS20395 (RE438_20370) - 3957801..3958442 (-) 642 WP_048563238.1 diguanylate cyclase domain-containing protein -
  RE438_RS20400 (RE438_20375) - 3958606..3958839 (+) 234 WP_000939452.1 SPP1 phage holin family protein -
  RE438_RS20405 (RE438_20380) - 3958871..3959371 (-) 501 WP_048563239.1 hypothetical protein -
  RE438_RS20410 (RE438_20385) - 3959795..3961336 (+) 1542 WP_000445749.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=874852 RE438_RS20385 WP_000804864.1 3955995..3956453(+) (kre) [Bacillus wiedmannii strain EPS29]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=874852 RE438_RS20385 WP_000804864.1 3955995..3956453(+) (kre) [Bacillus wiedmannii strain EPS29]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493