Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RE438_RS09770 Genome accession   NZ_CP133557
Coordinates   1885104..1885391 (+) Length   95 a.a.
NCBI ID   WP_048543174.1    Uniprot ID   A0A0J7DGS3
Organism   Bacillus wiedmannii strain EPS29     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1880104..1890391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS09750 (RE438_09720) - 1881285..1881482 (+) 198 WP_002203457.1 DUF4083 domain-containing protein -
  RE438_RS09755 (RE438_09725) - 1881513..1881974 (+) 462 WP_046954986.1 NUDIX hydrolase -
  RE438_RS09760 (RE438_09730) nadE 1882019..1882837 (-) 819 WP_048559658.1 ammonia-dependent NAD(+) synthetase -
  RE438_RS09765 (RE438_09735) - 1883108..1884988 (+) 1881 WP_048559659.1 ABC transporter permease -
  RE438_RS09770 (RE438_09740) abrB 1885104..1885391 (+) 288 WP_048543174.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RE438_RS09775 (RE438_09745) - 1885667..1886617 (+) 951 WP_048559660.1 serine protease -
  RE438_RS09780 (RE438_09750) galT 1886817..1888301 (+) 1485 WP_048559661.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  RE438_RS09785 (RE438_09755) - 1888579..1888887 (-) 309 WP_048559662.1 helix-turn-helix transcriptional regulator -
  RE438_RS09790 (RE438_09760) - 1888996..1889931 (+) 936 WP_048559663.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10619.36 Da        Isoelectric Point: 6.9800

>NTDB_id=874843 RE438_RS09770 WP_048543174.1 1885104..1885391(+) (abrB) [Bacillus wiedmannii strain EPS29]
MKATGIIRKVDELGRIVIPKELREVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=874843 RE438_RS09770 WP_048543174.1 1885104..1885391(+) (abrB) [Bacillus wiedmannii strain EPS29]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAGTTACGAGAAGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAATAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J7DGS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526