Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RE438_RS07850 Genome accession   NZ_CP133557
Coordinates   1497686..1498288 (-) Length   200 a.a.
NCBI ID   WP_016088614.1    Uniprot ID   A0A2B5P7P5
Organism   Bacillus wiedmannii strain EPS29     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492686..1503288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS07830 (RE438_07800) dnaD 1493033..1493740 (+) 708 WP_000728534.1 DNA replication protein DnaD -
  RE438_RS07835 (RE438_07805) nth 1493756..1494403 (+) 648 WP_002158563.1 endonuclease III -
  RE438_RS07840 (RE438_07810) - 1494407..1494925 (+) 519 WP_048561329.1 YpoC family protein -
  RE438_RS07845 (RE438_07815) - 1494948..1497620 (-) 2673 WP_048561328.1 PBP1A family penicillin-binding protein -
  RE438_RS07850 (RE438_07820) recU 1497686..1498288 (-) 603 WP_016088614.1 Holliday junction resolvase RecU Machinery gene
  RE438_RS07855 (RE438_07825) - 1498392..1499417 (+) 1026 WP_088057860.1 DUF2515 domain-containing protein -
  RE438_RS07860 (RE438_07830) - 1499727..1499903 (-) 177 WP_001982922.1 hypothetical protein -
  RE438_RS07865 (RE438_07835) - 1499989..1500231 (+) 243 WP_001252042.1 hypothetical protein -
  RE438_RS07870 (RE438_07840) - 1500247..1500585 (+) 339 WP_406655549.1 YppE family protein -
  RE438_RS07875 (RE438_07845) - 1500612..1500803 (-) 192 WP_000242661.1 YppF family protein -
  RE438_RS07880 (RE438_07850) - 1500981..1501505 (+) 525 WP_048561325.1 YppG family protein -
  RE438_RS07885 (RE438_07855) - 1501662..1502099 (+) 438 WP_048561324.1 CotD family spore coat protein -
  RE438_RS07890 (RE438_07860) - 1502156..1502710 (+) 555 WP_048543489.1 DUF1273 domain-containing protein -
  RE438_RS07895 (RE438_07865) gpsB 1502808..1503146 (+) 339 WP_000622425.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23333.60 Da        Isoelectric Point: 9.4276

>NTDB_id=874842 RE438_RS07850 WP_016088614.1 1497686..1498288(-) (recU) [Bacillus wiedmannii strain EPS29]
MTIRYPNGKRYNQASQPQKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=874842 RE438_RS07850 WP_016088614.1 1497686..1498288(-) (recU) [Bacillus wiedmannii strain EPS29]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCAAAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGACAA
AATACTGGTGGACGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5P7P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635