Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RE438_RS06500 Genome accession   NZ_CP133557
Coordinates   1250687..1251010 (-) Length   107 a.a.
NCBI ID   WP_000578867.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain EPS29     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245687..1256010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS06470 (RE438_06440) - 1246144..1246464 (+) 321 WP_048561464.1 helix-turn-helix domain-containing protein -
  RE438_RS06475 (RE438_06445) - 1246503..1247339 (+) 837 WP_239661443.1 IS3 family transposase -
  RE438_RS06480 (RE438_06450) sipW 1247537..1248106 (+) 570 WP_033659645.1 signal peptidase I SipW -
  RE438_RS06485 (RE438_06455) - 1248169..1248756 (+) 588 WP_000172832.1 CalY family protein -
  RE438_RS06490 (RE438_06460) - 1248891..1249715 (+) 825 WP_048561462.1 DUF4047 domain-containing protein -
  RE438_RS06495 (RE438_06465) calY 1250018..1250611 (+) 594 WP_048561461.1 biofilm matrix protein CalY -
  RE438_RS06500 (RE438_06470) sinR 1250687..1251010 (-) 324 WP_000578867.1 helix-turn-helix domain-containing protein Regulator
  RE438_RS06505 (RE438_06475) - 1251090..1251224 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  RE438_RS06510 (RE438_06480) inhA1 1251567..1253954 (+) 2388 WP_001035922.1 M6 family metalloprotease immune inhibitor InhA1 -
  RE438_RS06515 (RE438_06485) - 1254126..1255493 (+) 1368 WP_048561460.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12338.17 Da        Isoelectric Point: 8.5805

>NTDB_id=874839 RE438_RS06500 WP_000578867.1 1250687..1251010(-) (sinR) [Bacillus wiedmannii strain EPS29]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETAKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=874839 RE438_RS06500 WP_000578867.1 1250687..1251010(-) (sinR) [Bacillus wiedmannii strain EPS29]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGCAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAGCAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692