Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RE438_RS00220 Genome accession   NZ_CP133557
Coordinates   40434..40718 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus wiedmannii strain EPS29     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35434..45718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS00185 (RE438_00185) tmk 35584..36210 (+) 627 WP_000677225.1 dTMP kinase -
  RE438_RS00190 (RE438_00190) holB 36246..37229 (+) 984 WP_048562639.1 DNA polymerase III subunit delta' -
  RE438_RS00195 (RE438_00195) - 37235..38062 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  RE438_RS00200 (RE438_00200) yabA 38077..38430 (+) 354 WP_000412057.1 DNA replication initiation control protein YabA -
  RE438_RS00205 (RE438_00205) - 38552..39292 (+) 741 WP_001055375.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RE438_RS00210 (RE438_00210) - 39279..39569 (+) 291 WP_000414343.1 GIY-YIG nuclease family protein -
  RE438_RS00215 (RE438_00215) rsmI 39538..40413 (+) 876 WP_048562638.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RE438_RS00220 (RE438_00220) abrB 40434..40718 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RE438_RS00225 (RE438_00225) metG 41240..43222 (+) 1983 WP_000134153.1 methionine--tRNA ligase -
  RE438_RS00230 (RE438_00230) - 43388..44155 (+) 768 WP_048562637.1 TatD family hydrolase -
  RE438_RS00235 (RE438_00235) rnmV 44351..44908 (+) 558 WP_048562636.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=874825 RE438_RS00220 WP_000843036.1 40434..40718(-) (abrB) [Bacillus wiedmannii strain EPS29]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=874825 RE438_RS00220 WP_000843036.1 40434..40718(-) (abrB) [Bacillus wiedmannii strain EPS29]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851