Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q9312_RS07030 Genome accession   NZ_CP133548
Coordinates   1583634..1584827 (+) Length   397 a.a.
NCBI ID   WP_309203880.1    Uniprot ID   A0AA51X878
Organism   Pleionea litopenaei strain HL-JVS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578634..1589827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9312_RS07015 (Q9312_07015) nadC 1580000..1580857 (+) 858 WP_309203877.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Q9312_RS07020 (Q9312_07020) pilA2 1581267..1581707 (+) 441 WP_309203878.1 pilin Machinery gene
  Q9312_RS07025 (Q9312_07025) pilB 1581873..1583573 (+) 1701 WP_309203879.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9312_RS07030 (Q9312_07030) pilC 1583634..1584827 (+) 1194 WP_309203880.1 type II secretion system F family protein Machinery gene
  Q9312_RS07035 (Q9312_07035) - 1584828..1585727 (+) 900 WP_309203881.1 A24 family peptidase -
  Q9312_RS07040 (Q9312_07040) coaE 1585739..1586338 (+) 600 WP_309203882.1 dephospho-CoA kinase -
  Q9312_RS07045 (Q9312_07045) zapD 1586342..1587094 (+) 753 WP_309203884.1 cell division protein ZapD -
  Q9312_RS07050 (Q9312_07050) - 1587193..1587381 (+) 189 WP_309203885.1 DNA gyrase inhibitor YacG -
  Q9312_RS07055 (Q9312_07055) mutT 1587427..1587819 (-) 393 WP_309203886.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 42784.50 Da        Isoelectric Point: 8.8454

>NTDB_id=874801 Q9312_RS07030 WP_309203880.1 1583634..1584827(+) (pilC) [Pleionea litopenaei strain HL-JVS1]
MFTYSGVDKKGNKIKGELTADTQAIAKAQLRKQGVIPQKVVKKPQPLFGGGKKPITPADIALVARQLATMMKAGVPLVQS
FDIIGKGHENPSVQELILTIKADIEAGSTMAESLRKHPRQFDDLFCDLVAAGEQSGALEGMLDRIATYKEKTEALKSKIK
KALFYPIAVVVVAVIVTAILLIFVVPQFQGIFANFGAELPAFTMFVIGISEWLQANWLICLGIIIAAFFVIRHLNRTSEN
FRNGKDKMILKLPIIGDILNKAAVARFARTLSTTFAAGVPLVEALDSAAGASGNYVYRTGLLKIKEDVTTGMQMNISMVN
SGLFPNMVNQMVAIGEESGSIDAMLTKIADIYEREVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYLPIFQLGAVV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=874801 Q9312_RS07030 WP_309203880.1 1583634..1584827(+) (pilC) [Pleionea litopenaei strain HL-JVS1]
GTGTTTACCTATTCAGGTGTCGATAAAAAAGGTAATAAGATCAAAGGCGAGTTAACTGCAGATACTCAAGCCATCGCGAA
GGCCCAATTACGCAAGCAAGGTGTGATCCCGCAAAAGGTCGTGAAGAAGCCACAGCCTTTATTCGGGGGCGGCAAAAAGC
CAATCACGCCTGCAGACATCGCTCTGGTTGCCCGTCAACTCGCAACCATGATGAAAGCCGGTGTACCTCTCGTTCAGTCC
TTTGACATTATCGGTAAAGGGCATGAAAACCCCTCGGTTCAAGAGCTAATACTGACTATCAAAGCCGACATTGAGGCTGG
CTCAACCATGGCCGAATCACTGCGCAAGCACCCCAGACAGTTCGATGACCTGTTCTGCGACCTCGTGGCAGCTGGTGAGC
AATCAGGTGCTCTTGAGGGCATGCTTGATCGAATTGCAACGTATAAAGAGAAAACCGAAGCACTGAAATCGAAAATTAAG
AAAGCGCTCTTTTACCCTATCGCCGTTGTTGTGGTTGCCGTTATCGTTACTGCCATATTGTTGATTTTCGTGGTTCCACA
ATTCCAAGGCATTTTCGCGAACTTTGGTGCAGAACTTCCTGCATTCACCATGTTTGTTATCGGAATATCTGAATGGCTTC
AAGCCAATTGGTTAATTTGCTTAGGCATTATTATCGCTGCCTTTTTTGTCATCAGGCATCTCAATCGAACCTCTGAGAAC
TTTAGAAATGGCAAAGATAAAATGATTCTCAAGCTACCGATCATTGGAGATATTTTAAACAAAGCCGCGGTAGCCCGATT
TGCTCGTACACTTTCAACCACCTTTGCAGCAGGTGTTCCATTGGTTGAAGCACTAGACTCGGCGGCAGGCGCGTCTGGTA
ACTATGTTTATCGTACTGGTCTGTTGAAAATTAAAGAAGACGTCACTACCGGTATGCAAATGAACATATCCATGGTTAAT
TCAGGCCTTTTCCCTAATATGGTTAATCAAATGGTCGCTATCGGTGAAGAATCCGGTTCAATCGACGCCATGTTAACTAA
AATCGCTGACATTTATGAGCGTGAAGTTGACGATGCGGTTGATGGGTTGAGCTCACTTTTGGAACCACTCATCATGGCTG
TTCTTGGGGTTCTTGTGGGTGGCTTAATCGTTGCGATGTACTTACCAATCTTCCAGTTAGGTGCCGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.736

100

0.647
  pilC Legionella pneumophila strain ERS1305867

59.848

99.748

0.597
  pilC Acinetobacter baumannii D1279779

57.935

100

0.579
  pilC Acinetobacter baylyi ADP1

56.03

100

0.562
  pilG Neisseria meningitidis 44/76-A

44.25

100

0.446
  pilG Neisseria gonorrhoeae MS11

44.25

100

0.446
  pilC Vibrio cholerae strain A1552

42.172

99.748

0.421
  pilC Vibrio campbellii strain DS40M4

40.554

100

0.406
  pilC Thermus thermophilus HB27

38.366

100

0.39