Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   WJ038_RS06970 Genome accession   NZ_CP149505
Coordinates   1533739..1535283 (-) Length   514 a.a.
NCBI ID   WP_025520510.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain EB101     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528739..1540283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ038_RS06950 (WJ038_06940) - 1528753..1530183 (-) 1431 WP_029805291.1 lipopolysaccharide biosynthesis protein -
  WJ038_RS06955 (WJ038_06945) - 1530176..1531348 (-) 1173 WP_025591111.1 glycosyltransferase family 4 protein -
  WJ038_RS06960 (WJ038_06950) - 1531359..1532543 (-) 1185 WP_029805288.1 glycosyltransferase -
  WJ038_RS06965 (WJ038_06955) - 1532694..1533764 (-) 1071 WP_041955146.1 glycosyltransferase family 4 protein -
  WJ038_RS06970 (WJ038_06960) luxO 1533739..1535283 (-) 1545 WP_025520510.1 sigma-54 dependent transcriptional regulator Regulator
  WJ038_RS06975 (WJ038_06965) - 1535555..1535935 (-) 381 WP_029806152.1 Hpt domain-containing protein -
  WJ038_RS06980 (WJ038_06970) - 1535948..1536634 (-) 687 WP_029806154.1 CpsD/CapB family tyrosine-protein kinase -
  WJ038_RS06985 (WJ038_06975) - 1536634..1538655 (-) 2022 Protein_1341 SLBB domain-containing protein -
  WJ038_RS06990 (WJ038_06980) - 1538733..1539635 (-) 903 WP_005495092.1 OmpA family protein -
  WJ038_RS06995 (WJ038_06985) - 1539662..1539982 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57431.30 Da        Isoelectric Point: 5.8567

>NTDB_id=874726 WJ038_RS06970 WP_025520510.1 1533739..1535283(-) (luxO) [Vibrio parahaemolyticus strain EB101]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTPPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=874726 WJ038_RS06970 WP_025520510.1 1533739..1535283(-) (luxO) [Vibrio parahaemolyticus strain EB101]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGGGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATTCAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAGCGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGTTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGATAAACCTTTCATCGCCATCAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGTTAGCCAAACATTTTCTCACAACTTATGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACCACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAGCCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477