Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RDV59_RS09285 Genome accession   NZ_CP133476
Coordinates   1992946..1993677 (-) Length   243 a.a.
NCBI ID   WP_038676648.1    Uniprot ID   A0A0A1DYN5
Organism   Streptococcus salivarius strain LMG 11489     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1987946..1998677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS09255 (RDV59_09255) - 1988269..1989450 (+) 1182 WP_004183260.1 NAD(P)/FAD-dependent oxidoreductase -
  RDV59_RS09260 (RDV59_09260) tnpA 1989615..1990088 (-) 474 Protein_1783 IS200/IS605 family transposase -
  RDV59_RS09270 (RDV59_09270) trmB 1990412..1991053 (-) 642 WP_038676644.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RDV59_RS09275 (RDV59_09275) ccrZ 1991063..1991854 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  RDV59_RS09280 (RDV59_09280) pptB 1991912..1992946 (-) 1035 WP_371212501.1 ABC transporter permease Regulator
  RDV59_RS09285 (RDV59_09285) pptA 1992946..1993677 (-) 732 WP_038676648.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS09290 (RDV59_09290) - 1993742..1994161 (+) 420 WP_002891660.1 HIT family protein -
  RDV59_RS09295 (RDV59_09295) - 1994158..1994457 (+) 300 WP_002884229.1 hypothetical protein -
  RDV59_RS09300 (RDV59_09300) - 1994637..1994804 (-) 168 WP_002884708.1 hypothetical protein -
  RDV59_RS09305 (RDV59_09305) - 1994822..1995286 (-) 465 WP_172855709.1 hypothetical protein -
  RDV59_RS09310 (RDV59_09310) - 1995380..1995988 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  RDV59_RS09315 (RDV59_09315) - 1996006..1996131 (-) 126 WP_002884447.1 hypothetical protein -
  RDV59_RS09320 (RDV59_09320) - 1996567..1998672 (-) 2106 WP_038676649.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26815.08 Da        Isoelectric Point: 4.5340

>NTDB_id=874689 RDV59_RS09285 WP_038676648.1 1992946..1993677(-) (pptA) [Streptococcus salivarius strain LMG 11489]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLAIQQDSASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQTFGDNSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=874689 RDV59_RS09285 WP_038676648.1 1992946..1993677(-) (pptA) [Streptococcus salivarius strain LMG 11489]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAGCTATTCAACAAGATTCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTCTATGAAGAGTTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTATTCATCGTTGATGAGCCCTTC
TTGGGCTTGGATCCCTTGGCTATTTCGGACTTGATTGAGCTTTTGGCTGAGGAAAAAGCTAAGGGCAAAGCAATTCTCAT
GTCTACTCACGTTTTGGATTCGGCTGAGAAGATGTGTGACCGTTTTGTGATTTTGCACCATGGACAGGTCCTAGCACAGG
GAACTCTTGAAGAACTTCGTCAGACTTTCGGTGATAACAGTGCTAGTCTTAACGATATCTACATGCAGTTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1DYN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

98.354

100

0.984
  pptA Streptococcus thermophilus LMD-9

96.708

100

0.967