Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   RDV59_RS05085 Genome accession   NZ_CP133476
Coordinates   983089..983391 (+) Length   100 a.a.
NCBI ID   WP_004182757.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 982734..991306 983089..983391 within 0


Gene organization within MGE regions


Location: 982734..991306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS05080 (RDV59_05080) - 982734..983087 (+) 354 WP_004182758.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RDV59_RS05085 (RDV59_05085) HI0659 983089..983391 (+) 303 WP_004182757.1 helix-turn-helix domain-containing protein Machinery gene
  RDV59_RS05090 (RDV59_05090) - 983555..986545 (+) 2991 WP_038675717.1 type I restriction endonuclease subunit R -
  RDV59_RS05095 (RDV59_05095) - 986557..988239 (+) 1683 WP_223896513.1 HNH endonuclease family protein -
  RDV59_RS05100 (RDV59_05100) - 988232..989428 (+) 1197 WP_038675718.1 restriction endonuclease subunit S -
  RDV59_RS05105 (RDV59_05105) - 989438..991306 (+) 1869 WP_038675719.1 AAA family ATPase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10936.85 Da        Isoelectric Point: 9.7589

>NTDB_id=874667 RDV59_RS05085 WP_004182757.1 983089..983391(+) (HI0659) [Streptococcus salivarius strain LMG 11489]
MTPEKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMETGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=874667 RDV59_RS05085 WP_004182757.1 983089..983391(+) (HI0659) [Streptococcus salivarius strain LMG 11489]
ATGACTCCAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATCGC
GGCAAGTGAACTCCGTGTCGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGCATTTCTCAAAAGAAACTTG
AAGAATTGAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGACAGGTAAAACGGCACCTCAGTTAGATACGGTTCTT
AAAATACTGGCTAGTCTAGGTAAGACATTGGCAGTAGTCCCACTTGATTCACATGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.92

87

0.53