Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RDV59_RS03300 Genome accession   NZ_CP133476
Coordinates   632479..632922 (+) Length   147 a.a.
NCBI ID   WP_002885568.1    Uniprot ID   A0A0A1DW04
Organism   Streptococcus salivarius strain LMG 11489     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 627479..637922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS03285 (RDV59_03285) gdhA 628551..629903 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  RDV59_RS03290 (RDV59_03290) - 630184..631725 (+) 1542 WP_223896503.1 YfhO family protein -
  RDV59_RS03295 (RDV59_03295) - 631883..632293 (+) 411 WP_038675386.1 peptide deformylase -
  RDV59_RS03300 (RDV59_03300) rcrR 632479..632922 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RDV59_RS03305 (RDV59_03305) rcrP 632926..634740 (+) 1815 WP_038675388.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03310 (RDV59_03310) rcrQ 634730..636508 (+) 1779 WP_038675389.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03315 (RDV59_03315) - 636616..637239 (+) 624 WP_037599568.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17181.67 Da        Isoelectric Point: 9.3639

>NTDB_id=874657 RDV59_RS03300 WP_002885568.1 632479..632922(+) (rcrR) [Streptococcus salivarius strain LMG 11489]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKHFREAIHEQLLEGISKEDAETAFRVFHQIRMNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=874657 RDV59_RS03300 WP_002885568.1 632479..632922(+) (rcrR) [Streptococcus salivarius strain LMG 11489]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCTCAAGGATTTGCTGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAAGCTCGAGA
TGTCAAACATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAACAGCCTTTCGTG
TCTTTCACCAAATTCGTATGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1DW04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558