Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RDV59_RS01020 Genome accession   NZ_CP133476
Coordinates   187508..188275 (+) Length   255 a.a.
NCBI ID   WP_038676938.1    Uniprot ID   A0A448AFJ8
Organism   Streptococcus salivarius strain LMG 11489     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 182508..193275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS01005 (RDV59_01005) - 184822..185505 (-) 684 WP_038676936.1 YoaK family protein -
  RDV59_RS01010 (RDV59_01010) rlmH 185521..186000 (-) 480 WP_022495861.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RDV59_RS01015 (RDV59_01015) htrA 186206..187441 (+) 1236 WP_037611167.1 S1C family serine protease Regulator
  RDV59_RS01020 (RDV59_01020) spo0J 187508..188275 (+) 768 WP_038676938.1 ParB/RepB/Spo0J family partition protein Regulator
  RDV59_RS01025 (RDV59_01025) dnaA 188514..189878 (+) 1365 WP_002883970.1 chromosomal replication initiator protein DnaA -
  RDV59_RS01030 (RDV59_01030) dnaN 190033..191169 (+) 1137 WP_002883965.1 DNA polymerase III subunit beta -
  RDV59_RS01035 (RDV59_01035) - 191221..191412 (+) 192 WP_002883961.1 DUF951 domain-containing protein -
  RDV59_RS01040 (RDV59_01040) ychF 191622..192737 (+) 1116 WP_002883967.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29362.87 Da        Isoelectric Point: 9.7279

>NTDB_id=874639 RDV59_RS01020 WP_038676938.1 187508..188275(+) (spo0J) [Streptococcus salivarius strain LMG 11489]
MQEQLKALPISDIYPNPFQPRIEFSDEELAELSQSIAENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
KVTDQESRKQAIIENLQRSNLNPIEEAKAYRSLINELAYSHEELAKAMGKSRPYISNALRLLQLPQEIQTSIENGKLSQG
HARALLAVEDTKKQLTIYHQVLTEKWSVRTLEKRLQELPKKQKSKKDIHIKDKEKELEKSLGLPVTLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=874639 RDV59_RS01020 WP_038676938.1 187508..188275(+) (spo0J) [Streptococcus salivarius strain LMG 11489]
ATGCAAGAACAACTCAAAGCTTTACCTATTAGTGACATCTATCCCAATCCTTTTCAACCTCGTATAGAGTTCTCTGATGA
AGAATTAGCGGAGCTAAGCCAATCGATTGCAGAAAATGGACTGATACAGCCAATCATTGTCCGAAAATCGGATATTATTG
GTTATGAACTAATTGCTGGGGAAAGACGTTTACGTGCCTGTAAACGTCTAGGAATGACAGAAATCCCTGCAGTTGTAAAG
AAAGTTACAGATCAAGAAAGCCGTAAACAAGCTATTATTGAAAATTTACAACGATCGAATCTCAATCCCATTGAAGAAGC
AAAGGCCTATCGTAGTTTAATTAATGAGCTAGCTTATAGTCACGAGGAACTGGCGAAAGCTATGGGGAAATCCAGACCTT
ATATCAGTAACGCTCTCAGACTCCTCCAACTTCCCCAAGAGATACAGACGAGTATCGAAAATGGCAAACTGAGTCAAGGA
CATGCTAGAGCACTTTTAGCTGTTGAGGATACAAAAAAGCAATTAACTATCTATCATCAGGTCCTTACTGAAAAATGGTC
AGTTCGTACCCTGGAAAAAAGACTTCAAGAACTTCCAAAAAAACAAAAATCAAAAAAAGATATTCATATAAAAGATAAAG
AAAAAGAACTTGAAAAATCACTTGGTCTCCCTGTTACTCTTCGTTATCACAAAAATCACTCTGGAACTATTCAGATCCAC
TTTTCGACGGAAGAAGATTTTAACAGAATTATCAACAAGCTTATTTGA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(146-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448AFJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

58.039

100

0.58