Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RDV59_RS00415 Genome accession   NZ_CP133476
Coordinates   85636..86346 (+) Length   236 a.a.
NCBI ID   WP_022496083.1    Uniprot ID   A0AB33ZGA7
Organism   Streptococcus salivarius strain LMG 11489     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 80636..91346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS00405 (RDV59_00405) treC 81814..83439 (-) 1626 WP_038676878.1 alpha,alpha-phosphotrehalase -
  RDV59_RS00410 (RDV59_00410) treP 83503..85479 (-) 1977 WP_022496084.1 PTS system trehalose-specific EIIBC component -
  RDV59_RS00415 (RDV59_00415) treR 85636..86346 (+) 711 WP_022496083.1 trehalose operon repressor Regulator
  RDV59_RS00420 (RDV59_00420) - 86400..86960 (-) 561 WP_022496082.1 TIGR01440 family protein -
  RDV59_RS00425 (RDV59_00425) - 86976..87314 (-) 339 WP_014635137.1 hypothetical protein -
  RDV59_RS00430 (RDV59_00430) - 87347..87703 (-) 357 WP_002885732.1 hypothetical protein -
  RDV59_RS00435 (RDV59_00435) - 87964..88845 (-) 882 WP_038676880.1 class II fructose-bisphosphate aldolase -
  RDV59_RS00445 (RDV59_00445) - 89267..90562 (-) 1296 WP_038676882.1 glutamyl-tRNA synthetase -
  RDV59_RS00450 (RDV59_00450) rplQ 90812..91198 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27352.00 Da        Isoelectric Point: 6.8431

>NTDB_id=874636 RDV59_RS00415 WP_022496083.1 85636..86346(+) (treR) [Streptococcus salivarius strain LMG 11489]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQSLNSQTNVISLDKIIVDSKLSERTGLSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=874636 RDV59_RS00415 WP_022496083.1 85636..86346(+) (treR) [Streptococcus salivarius strain LMG 11489]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAATTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAAGCCTTAATTCGCAAACCAATGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAAACTCTCAGAAAGAACTGGTCTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTCGTTGATTATGCCAAGCGCCACCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602