Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RDV59_RS00115 Genome accession   NZ_CP133476
Coordinates   23303..24664 (-) Length   453 a.a.
NCBI ID   WP_072903619.1    Uniprot ID   A0A1V0HAK4
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 18303..29664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS00090 (RDV59_00090) rplA 20039..20728 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  RDV59_RS00095 (RDV59_00095) rplK 20828..21253 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  RDV59_RS00100 (RDV59_00100) - 21425..21778 (+) 354 WP_038676827.1 DUF3397 domain-containing protein -
  RDV59_RS00105 (RDV59_00105) - 21874..22371 (-) 498 WP_038676829.1 carbonic anhydrase -
  RDV59_RS00110 (RDV59_00110) - 22522..23217 (-) 696 WP_002885783.1 TIGR00266 family protein -
  RDV59_RS00115 (RDV59_00115) radA 23303..24664 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene
  RDV59_RS00120 (RDV59_00120) - 24661..25128 (-) 468 WP_038676832.1 isochorismatase family cysteine hydrolase -
  RDV59_RS00125 (RDV59_00125) - 25139..25585 (-) 447 WP_038676834.1 dUTP diphosphatase -
  RDV59_RS00130 (RDV59_00130) - 25793..26395 (+) 603 WP_038676836.1 NADPH-dependent FMN reductase -
  RDV59_RS00135 (RDV59_00135) - 26414..27664 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  RDV59_RS00140 (RDV59_00140) - 27850..28575 (+) 726 WP_223896476.1 formate/nitrite transporter family protein -
  RDV59_RS00145 (RDV59_00145) - 28584..29144 (+) 561 WP_038676838.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.83 Da        Isoelectric Point: 6.6528

>NTDB_id=874627 RDV59_RS00115 WP_072903619.1 23303..24664(-) (radA) [Streptococcus salivarius strain LMG 11489]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=874627 RDV59_RS00115 WP_072903619.1 23303..24664(-) (radA) [Streptococcus salivarius strain LMG 11489]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTAAAAAATGCTCGTGTCAGTTTAACGGGTGAAAAGT
CTAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTAGAG
GCTATAAAACCCGATTTTCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTTATGCAGATTGCCAAAACCAATAACATCGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAACTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGAGAACGT
CATCATACCTTCCGTATTTTGCGAGCAGTCAAAAACCGTTTTGGTTCAACTAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAAGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTCGCTGTTGCTA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCGAAGAATTCTCT
TCATGGTATGAAAATTCCAGAAGGTATCCAGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0HAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614