Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   RDV58_RS09700 Genome accession   NZ_CP133475
Coordinates   1955798..1956700 (-) Length   300 a.a.
NCBI ID   WP_002263524.1    Uniprot ID   A0AAX1K0S8
Organism   Streptococcus mutans strain LMG 14558     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950798..1961700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS09690 (RDV58_09675) ulaG 1952103..1953194 (-) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  RDV58_RS09695 (RDV58_09680) - 1953774..1955441 (-) 1668 WP_002280277.1 transcription antiterminator -
  RDV58_RS09700 (RDV58_09685) comB/nlmE 1955798..1956700 (-) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  RDV58_RS09705 (RDV58_09690) comA/nlmT 1956714..1958996 (-) 2283 WP_002263523.1 peptide cleavage/export ABC transporter Regulator
  RDV58_RS09710 (RDV58_09695) - 1959425..1959601 (-) 177 WP_002309972.1 hypothetical protein -
  RDV58_RS09715 (RDV58_09700) - 1959651..1960058 (-) 408 WP_002280431.1 hypothetical protein -
  RDV58_RS09720 (RDV58_09705) - 1960083..1960301 (-) 219 WP_002278706.1 Blp family class II bacteriocin -
  RDV58_RS09725 (RDV58_09710) - 1961381..1961659 (-) 279 WP_002264456.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34116.49 Da        Isoelectric Point: 10.4213

>NTDB_id=874621 RDV58_RS09700 WP_002263524.1 1955798..1956700(-) (comB/nlmE) [Streptococcus mutans strain LMG 14558]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=874621 RDV58_RS09700 WP_002263524.1 1955798..1956700(-) (comB/nlmE) [Streptococcus mutans strain LMG 14558]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACACTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

100

100

1