Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RDV58_RS09520 Genome accession   NZ_CP133475
Coordinates   1919700..1921100 (-) Length   466 a.a.
NCBI ID   WP_018110178.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1914700..1926100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS09495 (RDV58_09480) - 1915218..1915766 (-) 549 WP_002262515.1 hypothetical protein -
  RDV58_RS09500 (RDV58_09485) - 1915833..1916357 (-) 525 WP_002262516.1 transcription repressor NadR -
  RDV58_RS09505 (RDV58_09490) gltX 1916473..1917930 (-) 1458 WP_002262517.1 glutamate--tRNA ligase -
  RDV58_RS09510 (RDV58_09495) - 1918214..1918927 (-) 714 WP_002262518.1 TIGR00266 family protein -
  RDV58_RS09515 (RDV58_09500) - 1919116..1919610 (-) 495 WP_002280285.1 carbonic anhydrase -
  RDV58_RS09520 (RDV58_09505) radA 1919700..1921100 (-) 1401 WP_018110178.1 DNA repair protein RadA Machinery gene
  RDV58_RS09525 (RDV58_09510) - 1921058..1921528 (-) 471 WP_002268864.1 cysteine hydrolase family protein -
  RDV58_RS09530 (RDV58_09515) - 1921538..1921981 (-) 444 WP_002265011.1 dUTP diphosphatase -
  RDV58_RS09535 (RDV58_09520) - 1922305..1923324 (+) 1020 WP_002262523.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RDV58_RS09540 (RDV58_09525) galU 1923326..1924246 (+) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RDV58_RS09545 (RDV58_09530) - 1924268..1924939 (-) 672 WP_002265013.1 rhomboid family intramembrane serine protease -
  RDV58_RS09550 (RDV58_09535) - 1924926..1925462 (-) 537 WP_002277594.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51105.64 Da        Isoelectric Point: 7.1359

>NTDB_id=874620 RDV58_RS09520 WP_018110178.1 1919700..1921100(-) (radA) [Streptococcus mutans strain LMG 14558]
MADCWNSNERRIAIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=874620 RDV58_RS09520 WP_018110178.1 1919700..1921100(-) (radA) [Streptococcus mutans strain LMG 14558]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTGCCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.159

96.996

0.865
  radA Streptococcus pneumoniae D39

89.159

96.996

0.865
  radA Streptococcus pneumoniae R6

89.159

96.996

0.865
  radA Streptococcus pneumoniae TIGR4

89.159

96.996

0.865
  radA Streptococcus mitis SK321

89.159

96.996

0.865
  radA Streptococcus mitis NCTC 12261

88.938

96.996

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603