Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   WJ044_RS06635 Genome accession   NZ_CP149499
Coordinates   1286964..1288766 (-) Length   600 a.a.
NCBI ID   WP_002882188.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CIP 702     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1281964..1293766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ044_RS06610 (WJ044_06615) - 1282094..1283293 (+) 1200 WP_002876792.1 MFS transporter -
  WJ044_RS06615 (WJ044_06620) ciaC 1283349..1283669 (+) 321 WP_002876791.1 invasion antigen CiaC -
  WJ044_RS06620 (WJ044_06625) hemE 1283849..1284892 (+) 1044 WP_002882190.1 uroporphyrinogen decarboxylase -
  WJ044_RS06625 (WJ044_06630) - 1284867..1285769 (+) 903 WP_002805699.1 radical SAM protein -
  WJ044_RS06630 (WJ044_06635) - 1285766..1286962 (-) 1197 WP_002882189.1 hypothetical protein -
  WJ044_RS06635 (WJ044_06640) uvrC 1286964..1288766 (-) 1803 WP_002882188.1 excinuclease ABC subunit UvrC Machinery gene
  WJ044_RS06640 (WJ044_06645) - 1288759..1289253 (-) 495 WP_002882187.1 hypothetical protein -
  WJ044_RS06645 (WJ044_06650) guaA 1289392..1290927 (+) 1536 WP_002882186.1 glutamine-hydrolyzing GMP synthase -
  WJ044_RS06650 (WJ044_06655) - 1291013..1292473 (+) 1461 WP_002882185.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69771.76 Da        Isoelectric Point: 9.2435

>NTDB_id=874586 WJ044_RS06635 WP_002882188.1 1286964..1288766(-) (uvrC) [Campylobacter jejuni strain CIP 702]
MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
ASCKSPCIFYQISRCLAPCDKRISEEKYLEILDEAMHALLNPSILIKNLEKQMIHLAQNENYEEAAKVRDQIAMIKDLEV
KVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY
EEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPNDIEIFDNS
HLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMCEVLTRRALDFDKIPPPDLWLIDGGKALLDLAKEIIVSSGAN
VDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLS
SGVIQKLLAYYGNFESIYKADFKDLTMLVGKKAARKIREN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=874586 WJ044_RS06635 WP_002882188.1 1286964..1288766(-) (uvrC) [Campylobacter jejuni strain CIP 702]
TTGACTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCCAATAGCACTGGAGTTTATCAATACTTCAATCAAGAAGG
AAAGCTTTTGTATGTAGGCAAGGCTAAAAATCTTAAAAATCGTGTCAAATCTTATTTCGCTTTTACTCCAAATTTACATG
CAAACCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAGTGCATTTGGAATTTATCACTACTAATTCAGAG
GCTGATGCTTTGATTTTGGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTACTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCGCTTTATTTATACTATCCTTTAAAGCAAAAA
GCAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCACCTTGCGATAAACGCATTAGCGAGGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCACGCACTTTTAAATCCTAGTATTTTAATAAAAAATTTAGAAAAACAAATGA
TACATTTAGCACAAAATGAAAATTACGAAGAAGCAGCTAAAGTAAGAGATCAGATTGCAATGATTAAAGATTTGGAAGTT
AAGGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTATTTGCTTTAGCTTTTGAAAATTCCATGCTTTCAACCTT
GCGTTTTGTAGTGCAAAATGGAAAAATTATCAGTGCAAATTCTAAGATTACTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTATAAGCAACTGATTTTAGAAAATTTTAGCATGGATATTCCTTTGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAGTGCTTCTAGAAGAAATTTTAAGCCAAAGGTTTGATAAAAAAATCAGTATTAAAATTCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
ATTTTACTATACAAAAAGAATTAAAGTCTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGACAATTCT
CATTTGCAAGGCGTGGCAAATGTTGGAGCTATGGTAACTTATAGAATAAATTCTTGGGATAAGTCAAAATATAGAAAATT
TCATTTAAAACATAAAAATGACTATGATCAAATGTGTGAAGTTTTAACGCGTAGGGCTTTGGACTTTGATAAAATACCTC
CTCCTGATTTATGGCTTATAGATGGGGGAAAGGCTTTGCTTGATTTGGCTAAAGAAATCATTGTAAGTAGTGGGGCAAAT
GTCGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGAGCTAAAGGAGGTGCTAGGGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGCTTAAGTATTAACGATAAAAAACTACAATTCTTACAGAAATTAAGAGACGAAGCACACC
GTTTTGCTATCAGTTTTCATCAAAATACTAAGAAAAAACAGGACTTGAAAAGTTCTAAGCTTGCAAATTTAGGACTTAGT
TCAGGGGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTACAAT
GCTTGTAGGCAAGAAAGCGGCACGAAAGATAAGGGAAAATTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-537)

UvrB/uvrC motif (UVR)

(205-237)

GIY-YIG catalytic domain (GIY-YIG)

(18-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

46.465

99

0.46