Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WJ044_RS03060 Genome accession   NZ_CP149499
Coordinates   584010..584393 (+) Length   127 a.a.
NCBI ID   WP_002854812.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CIP 702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579010..589393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ044_RS03040 (WJ044_03040) - 579089..581023 (-) 1935 WP_002882550.1 ribonuclease R family protein -
  WJ044_RS03045 (WJ044_03045) ilvC 581142..582164 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  WJ044_RS03050 (WJ044_03050) - 582168..583250 (+) 1083 WP_002882551.1 divergent polysaccharide deacetylase family protein -
  WJ044_RS03055 (WJ044_03055) dprA 583240..584013 (+) 774 WP_002882553.1 DNA-processing protein DprA Machinery gene
  WJ044_RS03060 (WJ044_03060) dprB 584010..584393 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  WJ044_RS03065 (WJ044_03065) - 584422..585261 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WJ044_RS03070 (WJ044_03070) msrA 585437..585934 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WJ044_RS03075 (WJ044_03075) ppa 585975..586493 (-) 519 WP_002882557.1 inorganic diphosphatase -
  WJ044_RS03080 (WJ044_03080) adk 586503..587081 (-) 579 WP_002872374.1 adenylate kinase -
  WJ044_RS03085 (WJ044_03085) aspS 587078..588829 (-) 1752 WP_002882559.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.67 Da        Isoelectric Point: 8.4950

>NTDB_id=874566 WJ044_RS03060 WP_002854812.1 584010..584393(+) (dprB) [Campylobacter jejuni strain CIP 702]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=874566 WJ044_RS03060 WP_002854812.1 584010..584393(+) (dprB) [Campylobacter jejuni strain CIP 702]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441